PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_10850V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 650aa MW: 71693.6 Da PI: 7.4183 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 5.9e-13 | 178 | 277 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kv + d ++g +vlpk+ +eeh ++k++++ +tl d +g++W+++++++ ++++ y+++ +v++ +L+ gD+v F++ + Pp3c4_10850V3.2.p 178 FDKVASVTDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDATGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVFFSRLE-P 267 667777778889999*************99999********************9877777768887.7999****************665.8 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l+++ ++ Pp3c4_10850V3.2.p 268 QGTLFIGYRK 277 8888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-19 | 174 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-11 | 176 | 277 | No hit | No description |
SuperFamily | SSF101936 | 1.44E-17 | 176 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-9 | 178 | 278 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.319 | 178 | 279 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-9 | 180 | 277 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 11.764 | 466 | 516 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 6.5E-8 | 471 | 513 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MLGGDFPTLS QSQVRHAQFS NHIGSTCGEE SMERRGTFHS FFGKSTPTQE GTTKKSSSAL 60 ASTLSTCQIP VLGHHVCDFN SVSKSPGGTS ILVGCVLGKA IVKPKQQIRG SVKRNPGEDR 120 KELLATSPLN NGPTLNGKGR TGILTFPRSI SVNGPRIGNL NSPPPSQKFL GTTMTFLFDK 180 VASVTDCRST GHFVLPKRKV EEHFPPINKP GGIWMTLVDA TGKEWSFEFC FWHSKESRIY 240 YFKKFYPYVQ STDLRGGDTV FFSRLEPQGT LFIGYRKQKP PPPKQMKALN CGASKDQFKE 300 REHSNGGLTY LANDWSPSLE EVATRQKKPT KLSADDANVD YALDRGIIQR KKKRKKEFPP 360 LSLAQRTKVI DHLAVGEALI DKKSTSGRSS TPDTFQHDDR IAGVLGSKGK RLRVNADEYA 420 EWKEMQDLLR PAPGALPTVL TIEGHDFEEY EAPPVLITRT YHSPEAHGEN QWVKCNDCGS 480 WRRLSADAFV PAGWICSDSD LDQGRAYCNA PQELSDHEIH QLLGLGLDAE GRTETQEDLN 540 EDGDWTTPEH LYSAQADVCA YKQPTLWSAA MALVDGSLHR GTESYSELKS CESDTSVPEF 600 TDHGPDPAGA AKGYEIPRAD CYDFLGPVGK VLTPRSEIQP VTQHPLTTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 5e-23 | 170 | 277 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 5e-23 | 170 | 277 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 5e-23 | 170 | 277 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 5e-23 | 170 | 277 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 5e-23 | 170 | 277 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 5e-23 | 170 | 277 | 15 | 122 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 5e-23 | 170 | 277 | 16 | 123 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 355 | QRKKKRKK |
2 | 349 | 355 | RKKKRKK |
3 | 349 | 356 | RKKKRKKE |
4 | 351 | 355 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372601.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X3 | ||||
TrEMBL | A0A2K1KMY4 | 0.0 | A0A2K1KMY4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S227_33V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 2e-53 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_10850V3.2.p |