PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_9950V3.1.p
Common NamePHYPADRAFT_164645
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 751aa    MW: 83793.7 Da    PI: 5.2728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_9950V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12542588455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h ++Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ +I++Lq
  Pp3c3_9950V3.1.p 542 NHVQAERQRREKLNKRFYALRAVVPNV-----SKMDKASLLGDAIAHINHLQ 588
                       6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-6951227IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.99E-15536592No hitNo description
SuperFamilySSF474592.36E-17538602IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.393538587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17542603IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10542588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-17544593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MMEMGTPNYW DAADPLMVEA FIGGYEIPGY ETQDDLASTL GQDLEQNDSV LQRRLHRLVE  60
ESSEDWTYGI FWQLSLSPSG ESMLGWGDGY YKGPKDSDQF EPRKTQTEEH QLQRKKVLRE  120
LQALVSCPDD DGTEDVSDTE WFYLVSMCHS FAKGVGTPGQ ALAFGEYVWL EEADKASYKI  180
CTRANLAKMA GIQTILCVPI MNGVVELGST DAIHERLDVV EYVKMVFQEP TWGLTNMSPI  240
ISQSQVGKFD TTFMPHYPSI PFDSTSVSGV SSMTLNTDPG LADSESMDFG TRHSHMGKMV  300
SHSGAFGFNG YDHVWGQTNE FHYNDPLPDD NVERDLGQPM CNILGSLPLQ DEKLPLASSP  360
PPKTLDSDSR YSIFQQNNVK KPPQLDHTQT SLPVTERLHP KPHTSQAFLH HNGSFDVGEM  420
FNPPGHTQTV RSNPPSLDEQ LHSPSMPAVE KLPIVEKPTS IYKPESVEKP MPVFKPLPQP  480
PSPPASKPAV PVPANGLLLA GHLDQECVDT ELITMKNNVV EAPKVPRKRG RKPANDREEP  540
LNHVQAERQR REKLNKRFYA LRAVVPNVSK MDKASLLGDA IAHINHLQEK LQDAEMRIKD  600
LQRVASSKHE QDQEVLAIGT LKDAIQLKPE GNGTSPVFGT FSGGKRFSIA VDIVGEEAMI  660
RISCLREAYS VVNMMMTLQE LRLDIQHSNT STTSDDILHI VIAKMKPTLK FTEEQLIALL  720
ERSCQNTGYL RKREGSDRLL QRPDNSPQLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-40472275192Transcription factor MYC3
4rqw_B3e-40472275192Transcription factor MYC3
4rs9_A3e-40472275192Transcription factor MYC3
4yz6_A3e-40472275192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370450.10.0transcription factor MYC4-like
TrEMBLA0A2K1KTX70.0A0A2K1KTX7_PHYPA; Uncharacterized protein
STRINGPP1S74_38V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-48bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]