PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_950V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 638aa MW: 68107.8 Da PI: 8.1407 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.1e-39 | 211 | 269 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k ++cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG+lrnvPvG+grrknk+ Pp3c3_950V3.1.p 211 PDKVVSCPRCDSLETKFCYYNNYNINQPRHFCKNCQRYWTAGGTLRNVPVGAGRRKNKH 269 78999****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-29 | 208 | 268 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-32 | 212 | 269 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 215 | 269 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 217 | 253 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MSSEKLCDRR EGLLLLSANP KFCAGVKFPG LTNRVVSDSL YQELPSEEGK GVALDVVEQA 60 TMPDPFEWTL GVQPGCPKAT MDPEIKLFGQ TIGVASSRAD AGADAGVLKP TSASPPWNTA 120 RSSKQDGGDS SLFRNENEGG VVEKLRTARS SSRDEFLQPP KSTELVPGNR STMIFSLGAS 180 DSEGAHSDEL KDQGEGDHSQ YLGDDKHLQK PDKVVSCPRC DSLETKFCYY NNYNINQPRH 240 FCKNCQRYWT AGGTLRNVPV GAGRRKNKHG VVQRDCTEAS VNCSIQSDSS DSASQLLPCA 300 LGSPTSQKAG SSLKHSQPKR LVGQGSPMRS PRSTMSFSQD SGITLPPPFS LHRNGPIPYQ 360 SFSSSQGFLT SGSEVYTVGS SDSSSVTIGQ RIARFPSVNG MDKDCSRSSL SGQLQATHSL 420 RSMTTVYNPS LQLESSSGMH RSVLPPGSSG WPGNGAPAGL HSGEWPHNHL ELDGKHSTQV 480 VGTTYNTATT LPATSSWSAA NAQWGATQWG AGVSHLSNPA QMPTQVWPGG QQPMAPNATP 540 LDHSVVAVLS TLGKRGLSDE GSSMWPSKAL RPHGSRSLNS WSMSGKDQSE VNSSGNALNL 600 FRPKLEIGVA CETKDSFVSR HFTTVPPARP VPFQVTI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.17686 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626702 | 0.0 | AB626702.1 Physcomitrella patens PpDof5 mRNA for Dof transcription factor, partial cds, a part of 5' portion. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370377.1 | 0.0 | uncharacterized protein LOC112279878 | ||||
TrEMBL | A0A2K1KSS2 | 0.0 | A0A2K1KSS2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S1_286V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 7e-35 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_950V3.1.p |