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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_9350V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LFY | ||||||||
Protein Properties | Length: 280aa MW: 30950.5 Da PI: 8.0268 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 41.2 | 2.8e-13 | 146 | 221 | 38 | 116 |
FLO_LFY 38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavrae 116 ++aa + +++ +le +f ++G+r t+ ki+e+Gft +t++ d el l++s+ + ++ l +Ge +Gik a + Pp3c3_9350V3.2.p 146 VKSAAPSLTEAADLESFFDGFGIRPETIGKIKEMGFTGKTFMSNVD-ELLTLLDSIKQ--HCHLTLGEEWGIKGAAKKW 221 233344455577*****************************98665.56678888887..577899*******997644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 5.1E-8 | 150 | 219 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MVKVKGVEWN HVLVVKEPER HGMATLVRCA HCGKEFQGNA MRIRAHLLGN KRSAGVSGCP 60 SCPEDAREEL RIIDIAKSQV KRKRQDRTPR VPRATSSSDH SLDSAMQQMD FMTALQKGEK 120 SAVEQALRSM VFQGGLPVNF VNFSPVKSAA PSLTEAADLE SFFDGFGIRP ETIGKIKEMG 180 FTGKTFMSNV DELLTLLDSI KQHCHLTLGE EWGIKGAAKK WQKDHSMVFN QPELEKWPET 240 DNETANGCKE LSCLPSPVGE HAEMTQVKST LCGDKLRLN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11244 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369664.1 | 0.0 | uncharacterized protein LOC112279448 | ||||
TrEMBL | A0A2K1KTT2 | 0.0 | A0A2K1KTT2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S140_156V6.1 | 1e-159 | (Physcomitrella patens) |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_9350V3.2.p |