PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_8880V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 434aa MW: 47779.9 Da PI: 9.3612 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.6e-52 | 17 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL++k+e++ + + vi+e+d+yk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ Pp3c3_8880V3.2.p 17 LPPGFRFHPTDEELVLHYLCRKAESHVFAI-PVIAEIDLYKFDPWDLPGKAIFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIH 108 79*************************999.89***************7766799************************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +++g+kk Lvfykgrapkg+kt+W+mheyrl Pp3c3_8880V3.2.p 109 TSvgGIRKIGVKKALVFYKGRAPKGVKTNWIMHEYRL 145 99877788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-63 | 13 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.989 | 17 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 18 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MVILASPTGG PVTQLQLPPG FRFHPTDEEL VLHYLCRKAE SHVFAIPVIA EIDLYKFDPW 60 DLPGKAIFGE REWYFFSPRD RKYPNGARPN RAAASGYWKA TGTDKPIHTS VGGIRKIGVK 120 KALVFYKGRA PKGVKTNWIM HEYRLAEGVC ASVHAHRKGS LRLDDWVLCR IYKKSTNAQR 180 TGKERDSSSC VEEVLASLPE IGEPKLALPR LGSFTGFSEP DDNHFVEGLL TGENKSVEVE 240 SSPEFKRNIL SLQRGLQPHQ GTVGSHTLLG FNSKLPFGSK MARSMDGLFD NQQFDKFNRQ 300 VLELGPTSSQ RPTTLSLRQP ASDSAMRQVE NVLMPLRPGV GTMPENRAIS DEEVQSTFRS 360 TSIGQFSGAS NNEGLESIFS FNYEQPRATI NALLPGSTTG PNTELGFSGG SLSASPPQYT 420 RARAPNYSYN PSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-83 | 11 | 180 | 14 | 174 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.271 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369623.1 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A2K1KTP6 | 0.0 | A0A2K1KTP6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S140_93V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 7e-89 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_8880V3.2.p |