PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_6250V3.1.p | ||||||||
Common Name | PHYPADRAFT_64121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 374aa MW: 41355.3 Da PI: 6.2473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.2 | 9.4e-09 | 144 | 187 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++kGVr +++ +++eIr p++ +k+++lg++ t eeAa a +a Pp3c3_6250V3.1.p 144 RFKGVRKRRNVRGFLVEIRPPRW---KKTIWLGTYNTDEEAAGAFDA 187 69****9998888*******977...7**************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.09 | 144 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-14 | 144 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.35E-12 | 144 | 201 | No hit | No description |
Pfam | PF00847 | 8.6E-5 | 144 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-9 | 144 | 202 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-6 | 144 | 207 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MPDVSKVFLQ HTRDVDATLL QQSVVGWASR CVCGGVKSEI YECLTCPGSS EAVKVGLKSG 60 LDASTWKLEA ISGVPSSQSG GIEEKDGGAT HRAAKNRAST RTIAHGSVVN GGDLRRSRDS 120 SPDPPIKPQR GRPPNGTKPW YLNRFKGVRK RRNVRGFLVE IRPPRWKKTI WLGTYNTDEE 180 AAGAFDAGLF YTKKKIRYNF PMLAKSFPPL PEDLALDREE DAEKIKEFVK AQAAQAAAKI 240 KSMNIVSETT DNSRSPINIC NEAENNYNDR VVENTSHIPS CQESAQPADL TSHDFCVDQY 300 AHNLLCDQPD FDQYALQDMI HDYLNYHQFT PLVPYAPMPS FGDAVTDLNV GDMADHGVSR 360 MLPSNLDLDS EDY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.6235 | 0.0 | protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00658 | PBM | 25215497 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371134.1 | 0.0 | uncharacterized protein LOC112280184 | ||||
TrEMBL | A9RC32 | 0.0 | A9RC32_PHYPA; Uncharacterized protein | ||||
STRING | PP1S1_860V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-09 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_6250V3.1.p |
Entrez Gene | 5914787 |
Publications ? help Back to Top | |||
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