PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_6250V3.1.p
Common NamePHYPADRAFT_64121
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 374aa    MW: 41355.3 Da    PI: 6.2473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_6250V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.29.4e-09144187248
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                       ++kGVr +++   +++eIr p++   +k+++lg++ t eeAa a +a
  Pp3c3_6250V3.1.p 144 RFKGVRKRRNVRGFLVEIRPPRW---KKTIWLGTYNTDEEAAGAFDA 187
                       69****9998888*******977...7**************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.09144208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-14144202IPR001471AP2/ERF domain
CDDcd000186.35E-12144201No hitNo description
PfamPF008478.6E-5144184IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-9144202IPR016177DNA-binding domain
SMARTSM003802.0E-6144207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPDVSKVFLQ HTRDVDATLL QQSVVGWASR CVCGGVKSEI YECLTCPGSS EAVKVGLKSG  60
LDASTWKLEA ISGVPSSQSG GIEEKDGGAT HRAAKNRAST RTIAHGSVVN GGDLRRSRDS  120
SPDPPIKPQR GRPPNGTKPW YLNRFKGVRK RRNVRGFLVE IRPPRWKKTI WLGTYNTDEE  180
AAGAFDAGLF YTKKKIRYNF PMLAKSFPPL PEDLALDREE DAEKIKEFVK AQAAQAAAKI  240
KSMNIVSETT DNSRSPINIC NEAENNYNDR VVENTSHIPS CQESAQPADL TSHDFCVDQY  300
AHNLLCDQPD FDQYALQDMI HDYLNYHQFT PLVPYAPMPS FGDAVTDLNV GDMADHGVSR  360
MLPSNLDLDS EDY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.62350.0protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00658PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371134.10.0uncharacterized protein LOC112280184
TrEMBLA9RC320.0A9RC32_PHYPA; Uncharacterized protein
STRINGPP1S1_860V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-09ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]