PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_5480V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 136aa    MW: 15025.4 Da    PI: 8.2749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_5480V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.5e-074165223
                      EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                      +C+   Cgk+F+  s+L++Hi + H
  Pp3c3_5480V3.1.p 41 TCSepGCGKVFKYLSLLQTHIESvH 65
                      68888****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00294065IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.644070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-54161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804265IPR007087Zinc finger, C2H2
SMARTSM003551707398IPR015880Zinc finger, C2H2-like
SMARTSM0035541101122IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MGGVRSLIEC ECELQTHRRL RKKWDSNVLR GTKVEDDARL TCSEPGCGKV FKYLSLLQTH  60
IESVHDSSPV TQAICVEPGC GEIFDSLSQL KARIKVAHCY VVCETCGVSM LKKKLKSHTQ  120
THEGVQTLIR CSHPG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKKKLKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155966e-90gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5747334e-93EU574733.1 Physcomitrella patens TFIIIA gene, partial cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387832.15e-75transcription factor IIIA-like isoform X1
RefseqXP_024387833.15e-75transcription factor IIIA-like isoform X2
TrEMBLA0A2K1KTD65e-94A0A2K1KTD6_PHYPA; Uncharacterized protein
STRINGPP1S39_62V6.11e-73(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-16transcription factor IIIA