 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c3_37710V3.4.p |
| Common Name | PHYPADRAFT_132443 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 333aa MW: 37501.2 Da PI: 5.0106 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c3_37710V3.4.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.7 | 2.1e-18 | 96 | 149 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t eq++ Le+ Fe ++++ e++ +LAk+lgL rqV +WFqNrRa++k
Pp3c3_37710V3.4.p 96 KKRRLTIEQVRSLEKNFEAENKLEPERKMRLAKELGLRPRQVAIWFQNRRARWK 149
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 121.3 | 4.9e-39 | 95 | 187 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqv++LE++Fe+e+kLeperK++la+eLgl+prqva+WFqnrRAR+ktkqlE+dye+L + y++lk++ e++ +e+++L++el+
Pp3c3_37710V3.4.p 95 EKKRRLTIEQVRSLEKNFEAENKLEPERKMRLAKELGLRPRQVAIWFQNRRARWKTKQLERDYETLESDYKRLKADYEQVLSEKNHLKAELQ 186
69***************************************************************************************998 PP
HD-ZIP_I/II 93 e 93
+
Pp3c3_37710V3.4.p 187 R 187
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MAITSMGHYS GQNEVFTGNG NTSDSFAAMI GPCSPHVDLQ ALRRSGGGLG DDGQSQGGGQ 60
KRRYFASYDA PKMEDGPEDA DEGTEDGTGN GSQLEKKRRL TIEQVRSLEK NFEAENKLEP 120
ERKMRLAKEL GLRPRQVAIW FQNRRARWKT KQLERDYETL ESDYKRLKAD YEQVLSEKNH 180
LKAELQRKSR DVPASKQDDN NLGLESIQTP ERDRHVSDSD ARQLNSRSSP TVDISRVKDE 240
ISGSTDGNSS DIVDADSPRT TNSSRKSVIQ SSDFPPESLM GHPQLLDTYP EEKIRLDTAV 300
KLEDNFHEDQ SCNYLLLHLD QQSGVLPWWD WP*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 143 | 151 | RRARWKTKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028076 | 0.0 | AB028076.1 Physcomitrella patens mRNA for homeobox protein PpHB5, complete cds. |
