PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_35530V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | CAMTA | ||||||||
Protein Properties | Length: 1108aa MW: 122814 Da PI: 6.7176 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 172.5 | 6.2e-54 | 23 | 139 | 3 | 117 |
CG-1 3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 + ++rwl++ e+++iL+n++k+ ++l ++ rp sgs++L++rk +ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+e+n+ Pp3c3_35530V3.2.p 23 EAQSRWLRPVEVCEILKNYAKYGFKLnpVPPVRPCSGSMFLFDRKTLRYFRKDGHNWRKKKDGKTVREAHERLKTGSVDVLHCYYAHGEDNS 114 4499*****************9998866899************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 +fqrrcyw+L+ +le+ivlvhy+ev Pp3c3_35530V3.2.p 115 SFQRRCYWMLDPALEHIVLVHYREV 139 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.215 | 17 | 145 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.8E-73 | 20 | 140 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 8.7E-51 | 23 | 138 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.3E-5 | 549 | 637 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 4.0E-7 | 550 | 636 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 3.27E-17 | 551 | 637 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 1.13E-19 | 714 | 847 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-19 | 734 | 848 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.68E-17 | 745 | 841 | No hit | No description |
SMART | SM00248 | 2100 | 753 | 782 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.271 | 753 | 785 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 20.925 | 753 | 847 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.6E-7 | 758 | 846 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.274 | 786 | 818 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.8E-4 | 786 | 815 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4600 | 825 | 854 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 11 | 909 | 931 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.925 | 910 | 939 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.19E-8 | 912 | 979 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.821 | 929 | 958 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 260 | 932 | 950 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.1 | 932 | 949 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0021 | 951 | 973 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.468 | 952 | 976 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.9E-4 | 954 | 973 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 68 | 1026 | 1048 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.437 | 1028 | 1056 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1108 aa Download sequence Send to blast |
MAASRSRSGS QQPDIDIRQI IAEAQSRWLR PVEVCEILKN YAKYGFKLNP VPPVRPCSGS 60 MFLFDRKTLR YFRKDGHNWR KKKDGKTVRE AHERLKTGSV DVLHCYYAHG EDNSSFQRRC 120 YWMLDPALEH IVLVHYREVT EGGRFTMSDS QHGSSAAHAA SPPDVSNPAT PPELDQEDTD 180 VVESEDIEDP GSLDPIIPPN APQNTLLDQL TPRAQAAADL DNSPVNGWIE SDLRGGSSSH 240 LWMSSSSGVG TSTHENLLSV PTGLTPKLGQ FPQQSSNTQQ LGDNQFSDVF GAQDPFANGQ 300 RQEIFTGSID VTGWNRQMME NNARNNAVFG QSSGGPFPPQ NSTGAAISQS VGGPTTYVKQ 360 ESMQGTAMWS DILEQCTTPS IHRNIMESLM GNNQVEMSGS PRTQDLGSTQ VPPSKGILEA 420 LSPRGLGREP QTALEASLQA VTQEKALKSA GLYQRRLCGM RSESQQLDLQ FEKKVTMEKN 480 PELESFPKLD SFGRWMTHTL EGQNFLSPGA FQTSWPGTPT MGFSALPDDL YQIPVDASLS 540 TSVAADQRYS ITDSSPEWAY ATEGAKVLVS GVFLGDYANT SDVKWHCMFG EVEVPAEVIS 600 GGVLRCIAPP HAAGRVLFYV TCGDRQAHSE IREFEYRAGG RVALDNKAER QAAEERLFKL 660 RLAHLLLTES DENSGHLDEA TFLKQWQCLN SFSSSHSDAD WQEMETLANT TDFSQDVNFH 720 DRLLQVLLKA RMQKWLLSKI QEEGKGASVL DVRGQGVLHM AAALGYDWVI SPLLAAGVPI 780 NFRDARGWTA LHWAASFGKE QVVVALLGHG ADPGTVTDPT PSCPSGQTPA DLALMNGHVG 840 IGGFLAESSL TRRLSTMSLK ENPIAVANAH FAGESAVAKL SRRDSIKQTL SNRSFDEYGM 900 TESQIRGFVA ARAAHKIQKA YRGHQEKKQQ LAASRIQNKY RSWKVRKDYV NLRQRVVKIQ 960 AHVRGNLVRR RFRKLLWSVG VLDKVILRWR RKRSGLRGFK SGDLGVDTKE DDEEFLKEGR 1020 ILAEKAVEKA VTTVQSMVRS QPARDQYMRL REGSLKAEQS GQFHQLASPQ ELLTSPDVEY 1080 NSYEEFQNQH MNQYLESNGD QLMSFAD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370375.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
TrEMBL | A0A2K1KXF3 | 0.0 | A0A2K1KXF3_PHYPA; Uncharacterized protein | ||||
STRING | PP1S35_152V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 1e-127 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_35530V3.2.p |