PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_35530V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CAMTA
Protein Properties Length: 1108aa    MW: 122814 Da    PI: 6.7176
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_35530V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.56.2e-54231393117
               CG-1   3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                        + ++rwl++ e+++iL+n++k+ ++l   ++ rp sgs++L++rk +ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+e+n+
  Pp3c3_35530V3.2.p  23 EAQSRWLRPVEVCEILKNYAKYGFKLnpVPPVRPCSGSMFLFDRKTLRYFRKDGHNWRKKKDGKTVREAHERLKTGSVDVLHCYYAHGEDNS 114
                        4499*****************9998866899************************************************************* PP

               CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                        +fqrrcyw+L+ +le+ivlvhy+ev
  Pp3c3_35530V3.2.p 115 SFQRRCYWMLDPALEHIVLVHYREV 139
                        ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.21517145IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-7320140IPR005559CG-1 DNA-binding domain
PfamPF038598.7E-5123138IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.3E-5549637IPR013783Immunoglobulin-like fold
PfamPF018334.0E-7550636IPR002909IPT domain
SuperFamilySSF812963.27E-17551637IPR014756Immunoglobulin E-set
SuperFamilySSF484031.13E-19714847IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-19734848IPR020683Ankyrin repeat-containing domain
CDDcd002043.68E-17745841No hitNo description
SMARTSM002482100753782IPR002110Ankyrin repeat
PROSITE profilePS500889.271753785IPR002110Ankyrin repeat
PROSITE profilePS5029720.925753847IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-7758846IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.274786818IPR002110Ankyrin repeat
SMARTSM002481.8E-4786815IPR002110Ankyrin repeat
SMARTSM002484600825854IPR002110Ankyrin repeat
SMARTSM0001511909931IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.925910939IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.19E-8912979IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.821929958IPR000048IQ motif, EF-hand binding site
SMARTSM00015260932950IPR000048IQ motif, EF-hand binding site
PfamPF006120.1932949IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0021951973IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468952976IPR000048IQ motif, EF-hand binding site
PfamPF006123.9E-4954973IPR000048IQ motif, EF-hand binding site
SMARTSM000156810261048IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.43710281056IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MAASRSRSGS QQPDIDIRQI IAEAQSRWLR PVEVCEILKN YAKYGFKLNP VPPVRPCSGS  60
MFLFDRKTLR YFRKDGHNWR KKKDGKTVRE AHERLKTGSV DVLHCYYAHG EDNSSFQRRC  120
YWMLDPALEH IVLVHYREVT EGGRFTMSDS QHGSSAAHAA SPPDVSNPAT PPELDQEDTD  180
VVESEDIEDP GSLDPIIPPN APQNTLLDQL TPRAQAAADL DNSPVNGWIE SDLRGGSSSH  240
LWMSSSSGVG TSTHENLLSV PTGLTPKLGQ FPQQSSNTQQ LGDNQFSDVF GAQDPFANGQ  300
RQEIFTGSID VTGWNRQMME NNARNNAVFG QSSGGPFPPQ NSTGAAISQS VGGPTTYVKQ  360
ESMQGTAMWS DILEQCTTPS IHRNIMESLM GNNQVEMSGS PRTQDLGSTQ VPPSKGILEA  420
LSPRGLGREP QTALEASLQA VTQEKALKSA GLYQRRLCGM RSESQQLDLQ FEKKVTMEKN  480
PELESFPKLD SFGRWMTHTL EGQNFLSPGA FQTSWPGTPT MGFSALPDDL YQIPVDASLS  540
TSVAADQRYS ITDSSPEWAY ATEGAKVLVS GVFLGDYANT SDVKWHCMFG EVEVPAEVIS  600
GGVLRCIAPP HAAGRVLFYV TCGDRQAHSE IREFEYRAGG RVALDNKAER QAAEERLFKL  660
RLAHLLLTES DENSGHLDEA TFLKQWQCLN SFSSSHSDAD WQEMETLANT TDFSQDVNFH  720
DRLLQVLLKA RMQKWLLSKI QEEGKGASVL DVRGQGVLHM AAALGYDWVI SPLLAAGVPI  780
NFRDARGWTA LHWAASFGKE QVVVALLGHG ADPGTVTDPT PSCPSGQTPA DLALMNGHVG  840
IGGFLAESSL TRRLSTMSLK ENPIAVANAH FAGESAVAKL SRRDSIKQTL SNRSFDEYGM  900
TESQIRGFVA ARAAHKIQKA YRGHQEKKQQ LAASRIQNKY RSWKVRKDYV NLRQRVVKIQ  960
AHVRGNLVRR RFRKLLWSVG VLDKVILRWR RKRSGLRGFK SGDLGVDTKE DDEEFLKEGR  1020
ILAEKAVEKA VTTVQSMVRS QPARDQYMRL REGSLKAEQS GQFHQLASPQ ELLTSPDVEY  1080
NSYEEFQNQH MNQYLESNGD QLMSFAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370375.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2K1KXF30.0A0A2K1KXF3_PHYPA; Uncharacterized protein
STRINGPP1S35_152V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.21e-127signal responsive 1