 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c3_34860V3.4.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NF-YC |
| Protein Properties |
Length: 280aa MW: 30518.1 Da PI: 4.376 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c3_34860V3.4.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 34.6 | 4.2e-11 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ ++++v+ +fdfl +iv +
Pp3c3_34860V3.4.p 1 MQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMSSFHLKQCVQTNSVFDFLQEIVSK 69
899**************************************************************9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MQADEEVGKI AMATPVLISK ALELFLQNLC DKTYEITLRR GAKTMSSFHL KQCVQTNSVF 60
DFLQEIVSKV PDIGTETTCD ERNGGRRRKQ SDGDDSDEEE VVKRPKSEDQ STSGRGRGRG 120
RGRGRGRGRG RGSNGTPSSR SNGVEKAEDS EDAEMDTYSP SPDRENVILD PIVHKPRPKS 180
EEAAARDASP TSSGHTKSPK LLGFDLNMDL DENGEVAAGA DEATVNEEEV EHDGSNVPTQ 240
DLDVDSENVL GGTLHLQRSE LRPSLHPDED DYDCEDEDG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1jfi_A | 5e-16 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 120 | 130 | RGRGRGRGRGR |
| 2 | 122 | 131 | RGRGRGRGRG |
