 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pp3c3_34860V3.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NF-YC |
| Protein Properties |
Length: 299aa MW: 32894 Da PI: 4.5838 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c3_34860V3.1.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 55.5 | 1.3e-17 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ ++++v+ +fdfl +iv +
Pp3c3_34860V3.1.p 6 DTRFPAARIKKIMQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMSSFHLKQCVQTNSVFDFLQEIVSK 86
5789*************************************************************************9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MKKKLDTRFP AARIKKIMQA DEEVGKIAMA TPVLISKALE LFLQNLCDKT YEITLRRGAK 60
TMSSFHLKQC VQTNSVFDFL QEIVSKVPDI GTETTCDERN GGRRRKQSDG DDSDEEEVVK 120
RPKSEDQSTS GRGRGRGRGR GRGRGRGRGS NGTPSSRSNG VEKAEDSEDA EMDTYSPSPD 180
RENVILDPIV HKPRPKSEEA AARDASPTSS GHTKSPKLLG FDLNMDLDEN GEVAAGADEA 240
TVNEEEVEHD GSNVPTQDLD VDSENVLGGT LHLQRSELRP SLHPDEDDYD CEDEDEYN*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1jfi_A | 2e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 147 | RGRGRGRGRGR |
| 2 | 139 | 148 | RGRGRGRGRG |
