PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_33360V3.2.p
Common NamePHYPADRAFT_90569, PPTIM4
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 135aa    MW: 14385.2 Da    PI: 6.6757
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_33360V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73.1e-1318511144
                       HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       v +s+R++g++ KA+EL vLC+ +v +i+f ++g
  Pp3c3_33360V3.2.p 18 VGYSRRKHGLINKAKELGVLCGNQVVLIVFNPDG 51
                       88*****************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.442160IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-5160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-141778IPR002100Transcription factor, MADS-box
PfamPF003193.5E-111951IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-62237IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-63758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MGRNMIVVEL LPDSEIPVGY SRRKHGLINK AKELGVLCGN QVVLIVFNPD GSDVEEVATN  60
GNVMDILQRF VDFREYHLQH VHSVQVSSTG APKDHPQAPP NSTVNPLTVQ PTGTSSSAQG  120
LNPAVRSTAS TSNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371836.17e-95MADS-box transcription factor ANR1-like
TrEMBLA9TBF72e-93A9TBF7_PHYPA; Type I MADS-domain protein PPTIM4
STRINGPP1S198_149V6.13e-94(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-10AGAMOUS-like 21
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]