PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_32860V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 759aa MW: 81747.9 Da PI: 6.9295 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.1e-31 | 364 | 422 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++pr+YYrCt++ Cpv+k+vers+ed +v++tYeg+H h+ Pp3c3_32860V3.3.p 364 LDDGFKWRKYGQKAVKNSPHPRNYYRCTTPLCPVRKRVERSKEDAGLVITTYEGTHSHQ 422 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-33 | 349 | 424 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-27 | 357 | 424 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.871 | 359 | 424 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-37 | 364 | 423 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-24 | 365 | 422 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 759 aa Download sequence Send to blast |
MADKAPNEEG SQCDSTLDQL LQRQDQTNQE ATVSLSNSGA SMAEPSSEYL TLTTSNPWTA 60 FNVSSPLNSD LQTAINGLYR TSQPPPLYLL TNPLAEFPWL LEDQTIESHQ RGDSRWACNL 120 DSHDPDQRCS THNSLSTSHG DQLRGDILER TGVGNSGPPL LSQSMWRDSI KEEPASSLTS 180 AGSPARSSKV ARKEFQGHGT PRGNYGSSSK SDAEPVPRFD RTTSSEELSI PSHSPVQFGG 240 SSQSPFPRSQ NYWPTSVSPR LSEAIQGAGG SVTTSAGTSN TSLSSESTSN AGDEDEVEKE 300 VSTTGSEGTS TGKRKMSEAS ASGEAGGTDP KKSEPKNKPR KRGGAKRLRE PRYAIKTRTD 360 MDVLDDGFKW RKYGQKAVKN SPHPRNYYRC TTPLCPVRKR VERSKEDAGL VITTYEGTHS 420 HQTPSFHRPG GGYFGDRPQV GGGLFLNPGQ SPLGSGSSLL PLPPGFDLPS LQQAAELRNP 480 RGLQLNQNFQ GSNPRQQLNP MVRGPFGFPG QDSIFRASQL LGLQDPAFDP IKQEQFHFNA 540 QPSDFISRNI PNLSQLPIQQ QFEQPGSSLA GSGPGPAQSP DRPISENDSM QRSGSGIIPQ 600 ISSPLLRGLN FPNLPSSHMG PASSSSTLYE PDSSSLTMSR GQLRHEPLVG GSSSRIDQSL 660 ETLIRRPQLS LESEPSDRSI GGSHGLGSGM DQRTRTGLQR TVLPTMQAQV QQTRPGIERN 720 SPSEQASEAV VVVPPDVAFG EGLLQDMVRH GTPKASRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-24 | 352 | 424 | 2 | 74 | WRKY transcription factor 1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11333 | 0.0 | sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ889617 | 5e-47 | DQ889617.1 Physcomitrella patens clone 3 WKRY transcription factor-like gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370869.1 | 0.0 | uncharacterized protein LOC112280083 | ||||
Refseq | XP_024370870.1 | 0.0 | uncharacterized protein LOC112280083 | ||||
Refseq | XP_024370871.1 | 0.0 | uncharacterized protein LOC112280083 | ||||
TrEMBL | A0A2K1KWX2 | 0.0 | A0A2K1KWX2_PHYPA; Uncharacterized protein | ||||
STRING | PP1S198_83V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-34 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_32860V3.3.p |