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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pp3c3_31770V3.2.p |
| Common Name | MADS3, PHYPADRAFT_209690, PpMADS3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 417aa MW: 47101.9 Da PI: 7.5443 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c3_31770V3.2.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 85.9 | 2.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ien +nrqvtfskRrng++KKA+ELSvLCd++ a+i+fs++gkl y++
Pp3c3_31770V3.2.p 9 KKIENPTNRQVTFSKRRNGLIKKAYELSVLCDIDLALIMFSPSGKLTQYCN 59
68***********************************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MGRVKLEIKK IENPTNRQVT FSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYCNC 60
SIEEVIARFA NLPMHERNKS FEDMLARFSN NHMHHDRSKY NRKVENLEQL QRALKKLAEE 120
HGLAASQDHL SGSKSTYEIE LLQQELKKAQ QEKELVQQRA RLYLADEQLL QGVTSVPQLA 180
NMESELEQAL ERVRARKNYV SSAYQNVIQR QQHEFLGNSL QMMALRQQQS QQAQQQQAGM 240
TPSQVPYMHW TMQQERPEPT PQDFMEQQTN PAAPLMHASL NREPGSNGES NPGVGYFPSG 300
PQPSNMETLR QIGMGGVSRG LTMHEMSLEQ PNVAQYSEEQ KKAKVEASMG FVTSTSAGPV 360
GAEAVSKTNF SREQQPEQAH GTVSASEWPP HPANHHPHAY GNGSLFFSQN EHHAWK*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3mu6_A | 3e-18 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 3e-18 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 3e-18 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 3e-18 | 2 | 69 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 6byy_A | 7e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| 6byy_B | 7e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| 6byy_C | 7e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| 6byy_D | 7e-18 | 1 | 85 | 1 | 85 | MEF2 CHIMERA |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB067690 | 0.0 | AB067690.1 Physcomitrella patens PpMADS3 mRNA for MADS-box protein PpMADS3, complete cds. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP16 | 17 | 761 |
