PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_30010V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 858aa    MW: 93799.5 Da    PI: 6.7136
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_30010V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.48.8e-172381357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c3_30010V3.3.p 23 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 81
                       5678******************************9999*******************97 PP
2START148.84.9e-472094152203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++++++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W+++++++e+l v+ ++  g++
  Pp3c3_30010V3.3.p 209 IAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWQQDCRRMEVLGVLPTAngGTI 299
                        68999*****************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++l++ Rd+ ++Ry+  l++g +vi+++S++  q+ p     +s+vR+e++pSg+li+p+++g++ +++v+h d + +++++
  Pp3c3_30010V3.3.p 300 ELLYTQMYAPTTLASaRDYCTLRYTTILEDGNLVICERSLIGGQNGPPmppVQSFVRGEMFPSGYLIRPSDGGGCIIHVVDHYDNERWSVPE 391
                        ********************************************999888899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        +lr+l++s ++ +++ + a+l+++
  Pp3c3_30010V3.3.p 392 VLRPLYESPAVLAQRSTIAALRHL 415
                        ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4671882IPR001356Homeobox domain
SuperFamilySSF466894.71E-161985IPR009057Homeodomain-like
SMARTSM003893.7E-142086IPR001356Homeobox domain
CDDcd000861.72E-152383No hitNo description
PfamPF000462.6E-142481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-172581IPR009057Homeodomain-like
CDDcd146864.95E-475111No hitNo description
PROSITE profilePS5084822.668199399IPR002913START domain
CDDcd088758.56E-75203419No hitNo description
SMARTSM002343.5E-36208418IPR002913START domain
PfamPF018522.9E-44209415IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-21209413IPR023393START-like domain
SuperFamilySSF559616.87E-34209418No hitNo description
PfamPF086701.5E-21740835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MDGATKPRRS QSWNEQTMDS SGKYVRYTNE QVEALERVYH ECPKPSSIRR HQLIKESPIL  60
ANIEPKQIKV WFQNRRCREK QRKEASRLVS VNAKLTALNK LLMEENERLA KHTSQLTLEN  120
HALRQQLPGL PLTDGRHRLS SQNALKKEGA VNGGDESSTQ GGICVRIHGQ AGVASTDTSC  180
DSAVTGGLPH RLTPQHSPRD TSPAGLLAIA EETLTDFLAK ATGTAVDWIQ LPGMKPGPDA  240
IGIIAISHGC VGIAARACGL VALDASKVTE VLKDRPAWQQ DCRRMEVLGV LPTANGGTIE  300
LLYTQMYAPT TLASARDYCT LRYTTILEDG NLVICERSLI GGQNGPPMPP VQSFVRGEMF  360
PSGYLIRPSD GGGCIIHVVD HYDNERWSVP EVLRPLYESP AVLAQRSTIA ALRHLRRLAS  420
EESGEGNPRN GQHPVVLRTL SQRLAKGFKN AVNGFGDDGW VSTVSDGLED VSVMLNATPK  480
SMEGQIASDK LLYSLGGGIL CAKASMLLQN VSPSLLIGFL REHRSEWADF DIDANVATSF  540
RSNGNSYARG GGVSHVQLPL PLAHSGEHGE ILEVVKLEGH SSVQHMVLSR DSFLLQLCSG  600
IDENAVGASA QLIFAPVDVA LAEDIPLLPS GFCVSPIDAS VVGGFDLDRT LDLASTLEGG  660
SDLRLNGDTK SNGTSGQMRS VLTIAFQFAY EVHTRETCAV MARQYVRTVV ASVQRVAMAL  720
APSRAPAPLR QAPSNPDAIS LVRHVLSSYR LHLALDLTRP ENRGDEALFK AFWHHTDAIV  780
CCAWKGMPEF VFANRSGLEM FETTTSSLQD LDWDKTLNEN ECELSYTTFT QVLQQVWLLS  840
DYTWIQAKKK VFINYYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.78210.0gametophore| protonema| sporophyte
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572010.0DQ657201.1 Physcomitrella patens class III HD-Zip protein HB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370814.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4300.0Q0Q430_PHYPA; Class III HD-Zip protein HB11
STRINGPP1S55_99V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]