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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pp3c3_27940V3.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family |
WRKY |
Protein Properties |
Length: 685aa MW: 74177.3 Da PI: 9.4185 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pp3c3_27940V3.2.p | genome | COSMOSS | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.7 | 2.1e-32 | 329 | 386 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++v+ei+Y+g+Hnh+k
Pp3c3_27940V3.2.p 329 EDGYNWRKYGQKQVKGSEYPRSYYKCTQTNCPMKKKVERSH-DGQVTEIVYKGDHNHPK 386
7****************************************.***************85 PP
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2 | WRKY | 103.7 | 9.9e-33 | 491 | 549 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct gCpv+k+ver+++d k+v++tYeg+Hnh+
Pp3c3_27940V3.2.p 491 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDIKAVITTYEGKHNHD 549
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 685 aa
Download sequence Send
to blast |
MKGEHFGVTK ASSTESGTIL LIKPTPSRQQ PTSSSSMTTH KADSPMSIAS SFLNDQDPEH 60 ELKSFSHLLA GAMSPTAPSN NPTTSNPEEK PSPSMDAVGS NSPARSFAER LAARGAASNK 120 SESATEVGTA ARPPSTNNGS RYNNRPPPSS LPHPRSGSAG GGGGGNGSFL TIPPGLVSPT 180 TLFDPSPVML TNAQSEPSPT TGSFYYNGGM RALSNGSKDN QNANQGNQGF VFKPLGVKTV 240 SRNQMSHLPN LQLFAGMSQQ QAQVMAHMQS RQQQHQQQQQ QQLQQQQQQL SNQSSQRAAV 300 EAENSQDSEQ DNQPPPPMAA PTIMDRPSED GYNWRKYGQK QVKGSEYPRS YYKCTQTNCP 360 MKKKVERSHD GQVTEIVYKG DHNHPKPQPT RRMALSGAHS LSDGLSRDGD GNDSRPDSWV 420 GFQTQGHGGP SSASGSDDDD GSKLSNEDGD DDEQDSKRRK RNDNSKDATA APRTIREPRV 480 VVQTTSDVDI LDDGYRWRKY GQKVVKGNPH PRSYYKCTNV GCPVRKHVER ASTDIKAVIT 540 TYEGKHNHDV PAARNSGHDM AGPVGPPPTA AATALLDQGL RYGRQLPGGY GDVRRGESIA 600 QAISLRDRMR KDDDLYNTAP ISMGLSSNGD HRQGSQAMDG YRSQIMSRPK QEQGDTSSRP 660 SHPNPNSLMY QQNIAHNIAQ GLRR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}. |
Uniprot | TISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ889621 | 0.0 | DQ889621.1 Physcomitrella patens clone 5 WKRY transcription factor-like gene, partial sequence. |