PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_27900V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LBD

Protein Properties

Length: 437aa MW: 47338.4 Da PI: 6.6119

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_27900V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.9e-39	204	305	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+++C++apyf aeq ++kfa+vhk+FGasnv kll ++p +r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l+ Pp3c3_27900V3.1.p 204 PCGACKFLRRKCVRGCIFAPYFSAEQgAAKFAAVHKVFGASNVAKLLLHIPAPRRGDAVLTISYEAQARLSDPVYGCVATIFALQQQVASLQ 295 7***********************89************************************************************ PP DUF260 92 aelallkeel 101 aela+++++l Pp3c3_27900V3.1.p 296 AELAMVQTQL 305 ***99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.291	203	305	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-38	204	302	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MLVQDSHANV SRELMLDQVK HEVFAYRYIS PNLPLLSSCF SSIPSEGEGE GWDLRSGDLA 60 EKGKRPASQQ SDEALRDRQE LETWNREASR EHLVSWTGSI TPRDKDLDQG WKDKDQLENW 120 GQHSGERNPG VSEGLSAHNL DSGREQGVTD SAAPGSTERE CAGGLDNAAR SASAAARART 180 LGAQDYSGRR NTSGYNSSMS SGAPCGACKF LRRKCVRGCI FAPYFSAEQG AAKFAAVHKV 240 FGASNVAKLL LHIPAPRRGD AVLTISYEAQ ARLSDPVYGC VATIFALQQQ VASLQAELAM 300 VQTQLADRNT HLQQQHHQQQ RMTMAFGASA SQAAEYIQHQ HLADHSQLSP TSGLSMGMPG 360 GSSAGPYSRV KEEGSYLHGM QAHHYDIGMP TTSMEPASMS TEQSLLESLQ RSRSGGMGDQ 420 PDEGELQALA SLFRRK*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MLVQDSHANV SRELMLDQVK HEVFAYRYIS PNLPLLSSCF SSIPSEGEGE GWDLRSGDLA  60
EKGKRPASQQ SDEALRDRQE LETWNREASR EHLVSWTGSI TPRDKDLDQG WKDKDQLENW  120
GQHSGERNPG VSEGLSAHNL DSGREQGVTD SAAPGSTERE CAGGLDNAAR SASAAARART  180
LGAQDYSGRR NTSGYNSSMS SGAPCGACKF LRRKCVRGCI FAPYFSAEQG AAKFAAVHKV  240
FGASNVAKLL LHIPAPRRGD AVLTISYEAQ ARLSDPVYGC VATIFALQQQ VASLQAELAM  300
VQTQLADRNT HLQQQHHQQQ RMTMAFGASA SQAAEYIQHQ HLADHSQLSP TSGLSMGMPG  360
GSSAGPYSRV KEEGSYLHGM QAHHYDIGMP TTSMEPASMS TEQSLLESLQ RSRSGGMGDQ  420
PDEGELQALA SLFRRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	201	305	8	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	201	305	8	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370367.1	0.0	uncharacterized protein LOC112279864
TrEMBL	A0A2K1KWB7	0.0	A0A2K1KWB7_PHYPA; Uncharacterized protein
STRING	PP1S157_25V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP405	15	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-57	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Pp3c3_27900V3.1.p