PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_2760V3.1.p
Common NamePHYPADRAFT_63900
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 379aa    MW: 41057.9 Da    PI: 4.8671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_2760V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12163205855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+++++Lr ++Pk +      K++Ka+i   A+ Y+++Lq
  Pp3c3_2760V3.1.p 163 SERKRRKKLNEGLFQLRAVVPKiS------KMDKASIIGDAIAYVRELQ 205
                       6*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16146220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-13153209No hitNo description
PROSITE profilePS5088814.392155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16162222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9163205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MYRKLRHLSG SSIPPATIAQ QLRNSLQAYC PTSLPADTPP SNEATMNHKP IARSDSHFPD  60
PFWLLQDFSS DIPDQRDVNP NPLVPNSSQT STSMWGGVVG DREFSTQPVT APASKHSQSS  120
PIIGSPGDDV MEIPANSSDT AEEKPGGRKC SHSRCVASKN LVSERKRRKK LNEGLFQLRA  180
VVPKISKMDK ASIIGDAIAY VRELQKELEE IESEIDDLEQ KCTGSVGEET GSVEEAGTGA  240
NFSSPTYSNP ASGVEIQGAE PGVDSVDVVS ADATQVQLPA RLAQKILEVD VARLEEQTYH  300
FRIFCQRGPG VLVQLVQAVE SLGVQVINAH HTAFQENILN CFVAESFMTS QQMDSKMETE  360
DVKRTIFSAA AQYGLAQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-131632141263Transcription factor MYC2
5gnj_B3e-131632141263Transcription factor MYC2
5gnj_E3e-131632141263Transcription factor MYC2
5gnj_F3e-131632141263Transcription factor MYC2
5gnj_G3e-131632141263Transcription factor MYC2
5gnj_I3e-131632141263Transcription factor MYC2
5gnj_M3e-131632141263Transcription factor MYC2
5gnj_N3e-131632141263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163170ERKRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.19880.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371588.10.0transcription factor ICE1-like
RefseqXP_024371589.10.0transcription factor ICE1-like
TrEMBLA9RBH40.0A9RBH4_PHYPA; Uncharacterized protein
STRINGPP1S1_480V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-21bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]