PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_26370V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 712aa MW: 73983.3 Da PI: 6.9854 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.1 | 1.9e-38 | 271 | 331 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k +cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG lrnvPvG+grrk k+ss Pp3c3_26370V3.2.p 271 PDKLAPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGILRNVPVGAGRRKIKHSS 331 78899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 272 | 328 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 273 | 329 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.164 | 275 | 329 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 277 | 313 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MDSSSADTGG DKPRVLKSAT LLSRGLGSSG EGAGFRGQSG PAHVNMANGG SGPQKDYSLH 60 GTQLNRKEGA FADHINLNER REELQPSLHA RDVEGRVAGF GGGPSGVGAH ISGENPIKRD 120 EEGNHEDDGK GGAADELPGD EANVSSCSPL PFGRQEAKVV PLESIHSKAK GVEIIADGSA 180 LKSANNSKNE ASGASASVQI ASETTERNGP PLSQAVGDED ATVGPPPSHA PGDDADTAGP 240 PRPPAAADEA TVVPSPKQGK GQKQKPTLKK PDKLAPCPRC DSLDTKFCYY NNYNVNQPRH 300 FCKNCQRYWT AGGILRNVPV GAGRRKIKHS SSHPRHGAVP DIPAVRLDSL DMAQLRPCLS 360 RGSSVPHQVS PLLTCNASSP SNLNSLLNRQ ERGSSEAITQ TRSMHVAEAV RRHYISESQV 420 NIASDSGNRL LHAEHSDGCE PVLACEAEKD DCVEACTSSA TGSPSRTNVT PPTQEAQSML 480 RGPPTTLIPV CGGVVRPVGI LDGSVWTAAP SPFGLFNGSW PYGYNVGWSG PAPGAPGPPI 540 CPPGGTLVSC QPAVTWSSPP NGIWSGICWG STLIPGMPTG MPGPPWMSPG WGGGWPIPWG 600 PDAAAAAAAA SASASFQTAS APMSGSGFPP VQSRLPIRPV LNKHPRDRPD LDRVESSLWL 660 PKMVKVDDSG SAPRSSVWTA VGAENRVETV VSGSNFKAFL PVADSKASDT S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2176 | 0.0 | gametophore| protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626700 | 0.0 | AB626700.1 Physcomitrella patens PpDof4 mRNA for Dof transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370809.1 | 0.0 | uncharacterized protein LOC112280065 isoform X2 | ||||
TrEMBL | A0A2K1KW53 | 0.0 | A0A2K1KW53_PHYPA; Uncharacterized protein | ||||
STRING | PP1S351_46V6.3 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 4e-34 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_26370V3.2.p |