PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_26370V3.10.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Dof | ||||||||
Protein Properties | Length: 713aa MW: 74054.4 Da PI: 6.9854 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.1 | 1.9e-38 | 271 | 331 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k +cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG lrnvPvG+grrk k+ss Pp3c3_26370V3.10.p 271 PDKLAPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGILRNVPVGAGRRKIKHSS 331 78899****************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 272 | 328 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-31 | 273 | 329 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.164 | 275 | 329 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 277 | 313 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MDSSSADTGG DKPRVLKSAT LLSRGLGSSG EGAGFRGQSG PAHVNMANGG SGPQKDYSLH 60 GTQLNRKEGA FADHINLNER REELQPSLHA RDVEGRVAGF GGGPSGVGAH ISGENPIKRD 120 EEGNHEDDGK GGAADELPGD EANVSSCSPL PFGRQEAKVV PLESIHSKAK GVEIIADGSA 180 LKSANNSKNE ASGASASVQI ASETTERNGP PLSQAVGDED ATVGPPPSHA PGDDADTAGP 240 PRPPAAADEA TVVPSPKQGK GQKQKPTLKK PDKLAPCPRC DSLDTKFCYY NNYNVNQPRH 300 FCKNCQRYWT AGGILRNVPV GAGRRKIKHS SSHPRHGAVP DIPAVRLDSL DMAQLRPCLS 360 RGSSVPHQVS PLLTCNASSP SNLNSLLNRQ ERGSSEAITQ TRSMHVAEAV RRHYISAESQ 420 VNIASDSGNR LLHAEHSDGC EPVLACEAEK DDCVEACTSS ATGSPSRTNV TPPTQEAQSM 480 LRGPPTTLIP VCGGVVRPVG ILDGSVWTAA PSPFGLFNGS WPYGYNVGWS GPAPGAPGPP 540 ICPPGGTLVS CQPAVTWSSP PNGIWSGICW GSTLIPGMPT GMPGPPWMSP GWGGGWPIPW 600 GPDAAAAAAA ASASASFQTA SAPMSGSGFP PVQSRLPIRP VLNKHPRDRP DLDRVESSLW 660 LPKMVKVDDS GSAPRSSVWT AVGAENRVET VVSGSNFKAF LPVADSKASD TS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2176 | 0.0 | gametophore| protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB626700 | 0.0 | AB626700.1 Physcomitrella patens PpDof4 mRNA for Dof transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370803.1 | 0.0 | uncharacterized protein LOC112280065 isoform X1 | ||||
Refseq | XP_024370804.1 | 0.0 | uncharacterized protein LOC112280065 isoform X1 | ||||
Refseq | XP_024370805.1 | 0.0 | uncharacterized protein LOC112280065 isoform X1 | ||||
Refseq | XP_024370807.1 | 0.0 | uncharacterized protein LOC112280065 isoform X1 | ||||
Refseq | XP_024370808.1 | 0.0 | uncharacterized protein LOC112280065 isoform X1 | ||||
TrEMBL | A0A2K1KW53 | 0.0 | A0A2K1KW53_PHYPA; Uncharacterized protein | ||||
STRING | PP1S351_46V6.3 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 4e-34 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_26370V3.10.p |