PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_25610V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 425aa MW: 47553.3 Da PI: 5.3584 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.9 | 3.2e-56 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL+kkv ++++ + ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++v Pp3c3_25610V3.1.p 22 LPPGFRFHPTDEELVSYYLTKKVLDSRFAV-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGMRTNRATDAGYWKATGKDRDV 112 79**************************99.89***************99999*************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 l++ + +l+g+kktLvfy grapkgekt+W+mheyrle Pp3c3_25610V3.1.p 113 LAHgRPRLIGMKKTLVFYMGRAPKGEKTNWIMHEYRLE 150 *9866678****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 19 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.583 | 22 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-29 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MAAPWHQEPQ GKDQSQRVES FLPPGFRFHP TDEELVSYYL TKKVLDSRFA VRAIAEVDLN 60 KCEPWDLPEK AKMGEKEWYF FSLRDRKYPT GMRTNRATDA GYWKATGKDR DVLAHGRPRL 120 IGMKKTLVFY MGRAPKGEKT NWIMHEYRLE NDGGHPLSPR ANKDEWVVCR IFEKSSGGKR 180 GFSMSESHMR QGMAYQLEDA RSSLPPLMDN ESPNPTVIDE RTATNCETFV ETEQMSCYNR 240 VQDFDHKKEM NCVMSWINVQ PAGMDMVPQV GGLSSLDNGL PKPYPGNEIC EKSMSLSRQA 300 GFNQQALMQS ANMTTTTGFR VTSLRPKTEP LSFSEGEDEA QSTQKGCDYV NWPADLAGAS 360 LYQNDGTEGD SSSPLQSSTG GTDLSCLTGS LCSGENMSFD FKYRLQDITA PVDSGHGPEI 420 IGWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-56 | 22 | 180 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-56 | 22 | 180 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-56 | 22 | 180 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-56 | 22 | 180 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-56 | 22 | 180 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-56 | 22 | 180 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-56 | 22 | 180 | 17 | 171 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371500.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024371501.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024371502.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A2K1KW01 | 0.0 | A0A2K1KW01_PHYPA; Uncharacterized protein | ||||
STRING | PP1S288_4V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-83 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_25610V3.1.p |