PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_2470V3.4.p

Common Name

PpVNS6

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 368aa MW: 41883.2 Da PI: 6.82

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_2470V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.5	1.6e-50	8	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +p+GfrFhPtdeelv +yL+ kv +++ + i+e+d+yk+ePwdL+ ++ ++++wyfFs++dkky++g+r+nrat++g+Wkatg+ Pp3c3_2470V3.4.p 8 VPVGFRFHPTDEELVGYYLHGKVGRSQRDQ--LIQELDLYKIEPWDLQVcRIGDdppeNQNDWYFFSHKDKKYPSGNRANRATTAGFWKATGR 98 599******************9999655..8**********94333334444777**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl Pp3c3_2470V3.4.p 99 DKPIHT-QRHVTGMRKTLVFYKGRAPHGQKTDWIMHEFRL 137 **.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-53	6	160	IPR003441	NAC domain
PROSITE profile	PS51005	53.553	8	160	IPR003441	NAC domain
Pfam	PF02365	5.6E-27	9	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MNNNNAPVPV GFRFHPTDEE LVGYYLHGKV GRSQRDQLIQ ELDLYKIEPW DLQVCRIGDD 60 PPENQNDWYF FSHKDKKYPS GNRANRATTA GFWKATGRDK PIHTQRHVTG MRKTLVFYKG 120 RAPHGQKTDW IMHEFRLDEG PGVTLNFESD GWVVCRVFRK VKNLKSQETS CSFEEDQHLL 180 PELMSPANGS GGSNGRGGEE HYNPHLHHHF NFTCKQEISV DDYRSPIIEN LHHLQELQRS 240 IEDGGLHNSV GPSSSSTFRS LQQMCSNGRF SRDHAEYSVT PFHVESASLI DFDDAKSSVS 300 HESSSFPALT HHDADNWMLE CGASKGGPRR DQTLADVTCH VRIKTRQSSD HLSTSTNHEN 360 FVHFWNV*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MNNNNAPVPV GFRFHPTDEE LVGYYLHGKV GRSQRDQLIQ ELDLYKIEPW DLQVCRIGDD  60
PPENQNDWYF FSHKDKKYPS GNRANRATTA GFWKATGRDK PIHTQRHVTG MRKTLVFYKG  120
RAPHGQKTDW IMHEFRLDEG PGVTLNFESD GWVVCRVFRK VKNLKSQETS CSFEEDQHLL  180
PELMSPANGS GGSNGRGGEE HYNPHLHHHF NFTCKQEISV DDYRSPIIEN LHHLQELQRS  240
IEDGGLHNSV GPSSSSTFRS LQQMCSNGRF SRDHAEYSVT PFHVESASLI DFDDAKSSVS  300
HESSSFPALT HHDADNWMLE CGASKGGPRR DQTLADVTCH VRIKTRQSSD HLSTSTNHEN  360
FVHFWNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	8	160	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	8	160	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	8	160	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	8	160	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	8	160	20	168	NAC domain-containing protein 19
3swm_B	2e-43	8	160	20	168	NAC domain-containing protein 19
3swm_C	2e-43	8	160	20	168	NAC domain-containing protein 19
3swm_D	2e-43	8	160	20	168	NAC domain-containing protein 19
3swp_A	2e-43	8	160	20	168	NAC domain-containing protein 19
3swp_B	2e-43	8	160	20	168	NAC domain-containing protein 19
3swp_C	2e-43	8	160	20	168	NAC domain-containing protein 19
3swp_D	2e-43	8	160	20	168	NAC domain-containing protein 19
4dul_A	2e-43	8	160	17	165	NAC domain-containing protein 19
4dul_B	2e-43	8	160	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB898086	0.0	AB898086.1 Physcomitrella patens PpVNS6 mRNA for NAC transcription factor PpVNS6, complete cds, ecotype: Gransden 2004.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370102.1	0.0	NAC domain-containing protein 76-like isoform X2
TrEMBL	A0A2K1KT39	0.0	A0A2K1KT39_PHYPA; Uncharacterized protein
STRING	PP1S1_447V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	7e-68	NAC 007

Link Out ? help Back to Top
Phytozome	Pp3c3_2470V3.4.p

Publications ? help Back to Top
Xu B, et al. Contribution of NAC transcription factors to plant adaptation to land. Science, 2014. 343(6178): p. 1505-8 [PMID:24652936]