PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_2470V3.3.p | ||||||||
Common Name | PpVNS6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 42012.3 Da PI: 6.746 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.4 | 1.7e-50 | 8 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWka 85 +p+GfrFhPtdeelv +yL+ kv +++ + i+e+d+yk+ePwdL++ ++++wyfFs++dkky++g+r+nrat++g+Wka Pp3c3_2470V3.3.p 8 VPVGFRFHPTDEELVGYYLHGKVGRSQRDQ--LIQELDLYKIEPWDLQEvcriG--DdppeNQNDWYFFSHKDKKYPSGNRANRATTAGFWKA 96 599********************9999655..8**************9545440..24444777***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl Pp3c3_2470V3.3.p 97 TGRDKPIHT-QRHVTGMRKTLVFYKGRAPHGQKTDWIMHEFRL 138 *********.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-54 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.669 | 8 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-27 | 9 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MNNNNAPVPV GFRFHPTDEE LVGYYLHGKV GRSQRDQLIQ ELDLYKIEPW DLQEVCRIGD 60 DPPENQNDWY FFSHKDKKYP SGNRANRATT AGFWKATGRD KPIHTQRHVT GMRKTLVFYK 120 GRAPHGQKTD WIMHEFRLDE GPGVTLNFES DGWVVCRVFR KVKNLKSQET SCSFEEDQHL 180 LPELMSPANG SGGSNGRGGE EHYNPHLHHH FNFTCKQEIS VDDYRSPIIE NLHHLQELQR 240 SIEDGGLHNS VGPSSSSTFR SLQQMCSNGR FSRDHAEYSV TPFHVESASL IDFDDAKSSV 300 SHESSSFPAL THHDADNWML ECGASKGGPR RDQTLADVTC HVRIKTRQSS DHLSTSTNHE 360 NFVHFWNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 8 | 161 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 8 | 161 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 8 | 161 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 8 | 161 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 8 | 161 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 8 | 161 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 8 | 161 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898086 | 0.0 | AB898086.1 Physcomitrella patens PpVNS6 mRNA for NAC transcription factor PpVNS6, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370098.1 | 0.0 | NAC domain-containing protein 76-like isoform X1 | ||||
Refseq | XP_024370099.1 | 0.0 | NAC domain-containing protein 76-like isoform X1 | ||||
Refseq | XP_024370100.1 | 0.0 | NAC domain-containing protein 76-like isoform X1 | ||||
Refseq | XP_024370101.1 | 0.0 | NAC domain-containing protein 76-like isoform X1 | ||||
TrEMBL | X5II85 | 0.0 | X5II85_PHYPA; NAC transcription factor PpVNS6 | ||||
STRING | PP1S1_447V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 2e-70 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_2470V3.3.p |
Publications ? help Back to Top | |||
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