 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pp3c3_2470V3.1.p |
| Common Name | PpVNS6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NAC |
| Protein Properties |
Length: 368aa MW: 41883.2 Da PI: 6.82 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c3_2470V3.1.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.5 | 1.6e-50 | 8 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+p+GfrFhPtdeelv +yL+ kv +++ + i+e+d+yk+ePwdL+ ++ ++++wyfFs++dkky++g+r+nrat++g+Wkatg+
Pp3c3_2470V3.1.p 8 VPVGFRFHPTDEELVGYYLHGKVGRSQRDQ--LIQELDLYKIEPWDLQVcRIGDdppeNQNDWYFFSHKDKKYPSGNRANRATTAGFWKATGR 98
599********************9999655..8**************94333334444777******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl
Pp3c3_2470V3.1.p 99 DKPIHT-QRHVTGMRKTLVFYKGRAPHGQKTDWIMHEFRL 137
******.9999***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MNNNNAPVPV GFRFHPTDEE LVGYYLHGKV GRSQRDQLIQ ELDLYKIEPW DLQVCRIGDD 60
PPENQNDWYF FSHKDKKYPS GNRANRATTA GFWKATGRDK PIHTQRHVTG MRKTLVFYKG 120
RAPHGQKTDW IMHEFRLDEG PGVTLNFESD GWVVCRVFRK VKNLKSQETS CSFEEDQHLL 180
PELMSPANGS GGSNGRGGEE HYNPHLHHHF NFTCKQEISV DDYRSPIIEN LHHLQELQRS 240
IEDGGLHNSV GPSSSSTFRS LQQMCSNGRF SRDHAEYSVT PFHVESASLI DFDDAKSSVS 300
HESSSFPALT HHDADNWMLE CGASKGGPRR DQTLADVTCH VRIKTRQSSD HLSTSTNHEN 360
FVHFWNV*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-43 | 8 | 160 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-43 | 8 | 160 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB898086 | 0.0 | AB898086.1 Physcomitrella patens PpVNS6 mRNA for NAC transcription factor PpVNS6, complete cds, ecotype: Gransden 2004. |
