PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_2470V3.1.p | ||||||||
Common Name | PpVNS6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 41883.2 Da PI: 6.82 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 8 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvka....eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +p+GfrFhPtdeelv +yL+ kv +++ + i+e+d+yk+ePwdL+ ++ ++++wyfFs++dkky++g+r+nrat++g+Wkatg+ Pp3c3_2470V3.1.p 8 VPVGFRFHPTDEELVGYYLHGKVGRSQRDQ--LIQELDLYKIEPWDLQVcRIGDdppeNQNDWYFFSHKDKKYPSGNRANRATTAGFWKATGR 98 599********************9999655..8**************94333334444777******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl Pp3c3_2470V3.1.p 99 DKPIHT-QRHVTGMRKTLVFYKGRAPHGQKTDWIMHEFRL 137 ******.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-53 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.553 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-27 | 9 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNNNNAPVPV GFRFHPTDEE LVGYYLHGKV GRSQRDQLIQ ELDLYKIEPW DLQVCRIGDD 60 PPENQNDWYF FSHKDKKYPS GNRANRATTA GFWKATGRDK PIHTQRHVTG MRKTLVFYKG 120 RAPHGQKTDW IMHEFRLDEG PGVTLNFESD GWVVCRVFRK VKNLKSQETS CSFEEDQHLL 180 PELMSPANGS GGSNGRGGEE HYNPHLHHHF NFTCKQEISV DDYRSPIIEN LHHLQELQRS 240 IEDGGLHNSV GPSSSSTFRS LQQMCSNGRF SRDHAEYSVT PFHVESASLI DFDDAKSSVS 300 HESSSFPALT HHDADNWMLE CGASKGGPRR DQTLADVTCH VRIKTRQSSD HLSTSTNHEN 360 FVHFWNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-43 | 8 | 160 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-43 | 8 | 160 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-43 | 8 | 160 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-43 | 8 | 160 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898086 | 0.0 | AB898086.1 Physcomitrella patens PpVNS6 mRNA for NAC transcription factor PpVNS6, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370102.1 | 0.0 | NAC domain-containing protein 76-like isoform X2 | ||||
TrEMBL | A0A2K1KT39 | 0.0 | A0A2K1KT39_PHYPA; Uncharacterized protein | ||||
STRING | PP1S1_447V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 7e-68 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_2470V3.1.p |
Publications ? help Back to Top | |||
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