PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_24450V3.1.p
Common NamePHYPADRAFT_172497
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family TCP
Protein Properties Length: 502aa    MW: 51127 Da    PI: 8.5437
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_24450V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.74.8e-39742172124
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                        ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+++++i+++tgt++++a+ +  ++s +ssas         
  Pp3c3_24450V3.1.p  74 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQKSEQSIIAATGTGTIPATISsIQGSIRSSAS----Mavaa 161
                        789*************************************************************9999955543333333333....12223 PP

                TCP  89 .....................kaaksaakskksqksaasalnlakesrakararare 124
                                             ++++s   ++++ ++  + +  + ++r  +  ra e
  Pp3c3_24450V3.1.p 162 agragmhgslglagpgggttaEEMQSR-MQHEQAQRGRNEWGASTDERVLEATRAFE 217
                        445566777778888877763333333.33333333333455555555555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3578196IPR005333Transcription factor, TCP
PROSITE profilePS5136927.48180134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031347Biological Processregulation of defense response
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MTAMGGQGVG GVVGQVDSTA LAMAGMGQEY GGGEGQSSGA VSGMGSMSMA GGLGEQQQQQ  60
QQQQAPAVAA KKPPPKRTST KDRHTKVDGR GRRIRMPATC AARIFQLTRE LGHKSDGETI  120
EWLLQKSEQS IIAATGTGTI PATISSIQGS IRSSASMAVA AAGRAGMHGS LGLAGPGGGT  180
TAEEMQSRMQ HEQAQRGRNE WGASTDERVL EATRAFEASR RMSLGHGDPG MSHEVMAGFQ  240
HQDLVGGPSE AGEGMESPDS RMRKRPRPLQ SRMKEDPDQP ARPVRTTARP SMQQQGGQGQ  300
HQGGGSSSIM PAAMWAVAPV GAGVSSSGAM PGTIWMLPVS TSQGGASAGV MSGQSEQQIW  360
TFPTASGQYR MTAAAGTSIQ LGPGGNGGSG QGNTPTSGSS GQAMVPLMAS VMPRINLQGG  420
MGLELQGSHM GHHVPLGSML LQQGGQQMPG TGLGLGGGGE GHLGLLAAMN AYSRNLTPDH  480
QSMGGSGHQQ GDSGDDPTSS Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263267KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.127310.0gametophore| protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371284.10.0transcription factor TCP22-like isoform X1
RefseqXP_024371285.10.0transcription factor TCP22-like isoform X1
TrEMBLA9TX820.0A9TX82_PHYPA; Predicted protein
STRINGPP1S356_40V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.16e-27TCP family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]