PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_23050V3.2.p | ||||||||
Common Name | PHYPADRAFT_74401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 614aa MW: 67853.3 Da PI: 6.7678 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.3 | 3.2e-14 | 122 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kv + d ++g +vlpk+ +eeh ++k++++ +tl d g++W+++++++ ++++ y+l+ +v+a +L+ gD+v F++ + Pp3c3_23050V3.2.p 122 FDKVVSATDCRSTGHFVLPKRKVEEHfpPLSKPGGVWMTLIDDAGKEWSFEFCFWYSKESriYYLK-RFYPYVQATNLRGGDTVYFSRLE-P 211 8899999*********************88999*******************99777776668888.8999****************765.8 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e++l+++v+++ Pp3c3_23050V3.2.p 212 EGTLLMGVRKQ 222 88899999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-21 | 116 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-19 | 119 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-13 | 120 | 221 | No hit | No description |
Pfam | PF02362 | 5.0E-10 | 122 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-11 | 122 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.939 | 122 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.655 | 402 | 452 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.1E-10 | 407 | 449 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MPAEKKVSIH VLRGAAKRSS SALATTASTC QIPGGTSLLV GCVLGKNLTV THQQAQSCLE 60 QRPSDEREDT ELLLGLEVLN GKGRTGVSTV PRSMSINSPS STNPNLLPIS GKFSAANTTF 120 LFDKVVSATD CRSTGHFVLP KRKVEEHFPP LSKPGGVWMT LIDDAGKEWS FEFCFWYSKE 180 SRIYYLKRFY PYVQATNLRG GDTVYFSRLE PEGTLLMGVR KQKLASPKHG RAIKPKNELE 240 AKVLSSRDLK VSSEEGKSLL DDGALLEDHP ATPSTDDASV DYDLCKSTDK KKMMRLTSPP 300 PISFDTQSVD HIATGEAVAT RKRRSITPES SEQINMKPGS QSSRGKRLGL TMEDYYEWED 360 IQDLFRAPPG AIATYTCVEG HEIEEYKEPP VLIKKTFYSA EIQEDDQWVQ CDDCGCWRRL 420 PADAFVHARW VCSDNEWDSR RARCNAPQEL SDHEMDRLLE GLSEADFAGS ETVSKLESYD 480 SDSGIPPFIP SEEEDSYCKQ PQTWNEAYGQ MQKKASQLVL NKKCKSVTSG KELSNGGEDL 540 LRSTDLINLS SRSPASMFGY ETPHPSTKAG KGHQMCTGCS KPIGSAAQGC KRCGTLTEYG 600 IRSRAQFSAG YRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 6e-26 | 98 | 230 | 1 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 319 | 324 | TRKRRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372281.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Refseq | XP_024372282.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Refseq | XP_024372283.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
Refseq | XP_024372284.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X1 | ||||
TrEMBL | A9S4D9 | 0.0 | A9S4D9_PHYPA; Predicted protein | ||||
STRING | PP1S47_98V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 2e-47 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_23050V3.2.p |
Entrez Gene | 5924422 |
Publications ? help Back to Top | |||
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