PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_1630V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 352aa    MW: 38088 Da    PI: 9.7202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_1630V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12555146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      +++WT+eE+  l  +v+++G+g W++I +        + R+  ++k++w++
  Pp3c3_1630V3.1.p  5 KQKWTAEEEAALRAGVEKYGPGKWRAIQKDSKfgpclTSRSNVDLKDKWRN 55
                      79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.36161IPR017930Myb domain
SuperFamilySSF466894.26E-16258IPR009057Homeodomain-like
SMARTSM007171.9E-9459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-15556IPR009057Homeodomain-like
PfamPF002499.6E-10555IPR001005SANT/Myb domain
CDDcd116603.78E-21656No hitNo description
SMARTSM005265.2E-16115180IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.893117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.4E-14119189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-15119193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.8E-9120178IPR005818Linker histone H1/H5, domain H15
CDDcd000733.20E-10121178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALRAGV EKYGPGKWRA IQKDSKFGPC LTSRSNVDLK DKWRNMSVSA  60
NGLGSARKPL AITAGPGMLT LMEDVASVKP LSVVAPGDEG YVVKRESADT SGDRKSLGSR  120
YDNMVFEAVL GLKEPYGSSN ASIASYIEER HAVPSNFRRL LTTKLKSLAL SGKLVKVRQN  180
YKMNEGNESP SSVAEEPEVR EREREREREH VGTVSDGRVQ KGSRLRRQEV HCDDSNKPHP  240
SRVPRDAWDL RDSSKRIRPE SLPYKKPKTD IEHLARARAK TAEEAARAAA LAVAEAEAAA  300
AAAEAAAREA EAAEAEAEAL EAAAEAAAAA AIRHPKKLRA MAIMQEVAVN G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.88700.0protonema
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:14576282}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats 5'-TTTAGGG-3', but can also bind to the single G-rich and C-rich telomeric strand. {ECO:0000269|PubMed:14576282}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371594.10.0telomere repeat-binding factor 1-like
SwissprotQ6WS854e-46SMH1_MAIZE; Single myb histone 1
TrEMBLA0A2K1KSX90.0A0A2K1KSX9_PHYPA; Uncharacterized protein
STRINGPP1S1_349V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-35telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]