PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_14670V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 436aa    MW: 47221.9 Da    PI: 6.471
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_14670V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.5e-333892155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprlrWt+eLHerFv+av++LGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl
  Pp3c3_14670V3.1.p 38 KPRLRWTSELHERFVDAVTELGGADKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 92
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576129No hitNo description
PROSITE profilePS5129411.7733595IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-323693IPR009057Homeodomain-like
SuperFamilySSF466893.23E-163793IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-243893IPR006447Myb domain, plants
PfamPF002493.6E-84091IPR001005SANT/Myb domain
PfamPF143798.8E-24139186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MYQMKKYSSV GLVPHRQHQV SPYASAVSCE EMSPTDPKPR LRWTSELHER FVDAVTELGG  60
ADKATPKSVM RVMGVKGLTL YHLKSHLQKY RLGKQLHRDS RVHEANKDGS HESSDMQGTS  120
NGTSDGTLTP TSQNPQDNIQ IPEAMRLQME IQCRLHEQLE VQRELQLRIE AQGKYLQTIL  180
EKAKETLAGH TSTSPHVKAA HDELTELASK VISDPGTFEV TLPQHLAGLN PPQLSNHASD  240
SMQVVSNRVQ DVTSPSLPGL QSGRTSDTSS PKSQLTTFQE DSGGVSGGGE QPTVPGGNSN  300
TGNQMQLSAG GNSSSNNDEV DDDHGPRLAI SATEFGASAG PGVPPERPTP RRGAIPIRFT  360
DSQKNNNDNR FHSNVIAASF PLQQRMSSTV NAEGALDLNH GDHHHSHTNS SNSNGNSIQP  420
ERDGDLDLNA VGWER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-203894157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.167210.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371011.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371012.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371013.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371014.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371015.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371016.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371017.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371018.10.0protein PHR1-LIKE 3-like isoform X1
RefseqXP_024371019.10.0protein PHR1-LIKE 3-like isoform X1
TrEMBLA0A2K1KUG60.0A0A2K1KUG6_PHYPA; Uncharacterized protein
STRINGPP1S25_131V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-65G2-like family protein