PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_12890V3.5.p | ||||||||
Common Name | PpVNS2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 44259.5 Da PI: 6.3594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.9 | 1.4e-51 | 8 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +p+GfrFhPtdeelv +yL kkv+++k++l + i+++d+yk+ePwdL++ +++++++yfFs++dkky+tg+r+nrat++g+Wkat Pp3c3_12890V3.5.p 8 VPVGFRFHPTDEELVGYYLPKKVTARKIDL-DLIRDLDLYKLEPWDLQElckiqaDSNEKQTDYYFFSRKDKKYPTGNRANRATTKGFWKAT 98 599***************************.99**************95565533222345577**************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++++k ++l+g++ktLvfy+grap+g+ktdW+mhe+rl Pp3c3_12890V3.5.p 99 GRDKPIHTKLQTLIGMRKTLVFYQGRAPHGVKTDWIMHEFRL 140 ********9999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-54 | 5 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.363 | 8 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-26 | 9 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MTQPTTKVPV GFRFHPTDEE LVGYYLPKKV TARKIDLDLI RDLDLYKLEP WDLQELCKIQ 60 ADSNEKQTDY YFFSRKDKKY PTGNRANRAT TKGFWKATGR DKPIHTKLQT LIGMRKTLVF 120 YQGRAPHGVK TDWIMHEFRL DDGPGRPAHE DGGWVVCRVF KKNKNLKLKL QEKAVSYEEQ 180 LGLPSEHMGS PDILSGGARF AYPEQTRYAD QPQYGSIKQE IINLDEYQSR HSDMYVNQFS 240 AQMEMPTKVE NQSHSMPSSS ISDQARSYLC RVLSFRRPDD YLNLNPYPET PANPENSTEY 300 TEPQTSGSGS DGDTHEEESI LGNLDSVDWS ALLQEPTSGK DLRCPTPVST KANADDMTAL 360 IQLRRQNSDI FSSLDLWNYA HVAQQTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 8 | 162 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB898082 | 0.0 | AB898082.1 Physcomitrella patens PpVNS2 mRNA for NAC transcription factor PpVNS2, complete cds, ecotype: Gransden 2004. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369492.1 | 0.0 | NAC domain-containing protein 105-like | ||||
Refseq | XP_024369494.1 | 0.0 | NAC domain-containing protein 105-like | ||||
Refseq | XP_024369495.1 | 0.0 | NAC domain-containing protein 105-like | ||||
Refseq | XP_024369496.1 | 0.0 | NAC domain-containing protein 105-like | ||||
Refseq | XP_024369497.1 | 0.0 | NAC domain-containing protein 105-like | ||||
TrEMBL | X5IAY4 | 0.0 | X5IAY4_PHYPA; NAC transcription factor PpVNS2 | ||||
STRING | PP1S161_73V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 4e-62 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_12890V3.5.p |
Publications ? help Back to Top | |||
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