![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c3_11980V3.2.p | ||||||||
Common Name | DP2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 319aa MW: 34892.1 Da PI: 6.1372 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 81.7 | 6.2e-26 | 41 | 133 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...........................dvknkrRRiYDilNVLealnliekkekne 66 +k+Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i k +k++ Pp3c3_11980V3.2.p 41 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpdsphvspdqgadtvsvragqqqyDEKNIRRRVYDALNVLMAVGIILK-DKKD 128 79********...*****999******************************************************************.**** PP E2F_TDP 67 irwkg 71 i+wkg Pp3c3_11980V3.2.p 129 IQWKG 133 ***98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.8E-42 | 35 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 8.0E-33 | 39 | 133 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.35E-19 | 42 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.1E-24 | 42 | 133 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 1.92E-39 | 138 | 240 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 3.3E-53 | 140 | 262 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.66E-40 | 140 | 245 | No hit | No description |
Pfam | PF08781 | 5.3E-35 | 141 | 245 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MVSNGIDARL AHLDDPDSPD AEVIGGKKKR GGRAAGGEKG GKGLRHFSMK VCEKVESKGR 60 TTYNEVADEL VAEFTNPDSP HVSPDQGADT VSVRAGQQQY DEKNIRRRVY DALNVLMAVG 120 IILKDKKDIQ WKGFPSASID DVADLKAESM RIRGRIERKA AYLHELQSQM TGLRNLVSRN 180 ESLSQGNNSV PHVALPFILV QTRPQATVEV EISEDMQVVH FDFNSTPFEL HDDAYVLKAM 240 KLQEQPGGTC SDGMVHADFE DEIGSFEEDS PPVSGVFQRS NFPAHPSSHY ASMSGAGKNS 300 WPPVPGILKA RVKHENVS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-34 | 33 | 138 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.13755 | 0.0 | gametophore| protonema |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB547341 | 0.0 | AB547341.1 Physcomitrella patens DP;2 mRNA for DP transcription factor;2, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372177.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-100 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | G1UDG1 | 0.0 | G1UDG1_PHYPA; DP transcription factor2 | ||||
STRING | PP1S74_252V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03415.1 | 2e-93 | Transcription factor DP |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c3_11980V3.2.p |