PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 729aa MW: 76835 Da PI: 6.4271

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_10940V3.9.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.6	1.2e-32	407	461	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH++Fv+av+qLGG+e+AtPk++l++m+v+g+t++hvkSHLQkYRl Pp3c3_10940V3.9.p 407 KTRLRWTPELHDKFVDAVAQLGGPERATPKAVLRVMGVNGITIYHVKSHLQKYRL 461 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.511	404	465	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-30	405	461	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.78E-17	406	462	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	407	461	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	409	460	IPR001005	SANT/Myb domain
Pfam	PF14379	5.6E-20	491	536	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MPSQMPPLLP SLAAHQQGYD SSGSPRASPG VSQAFPPAGA QFASQPFLPS STAALGGIQY 60 QVCGANSTQQ RSYYSVDTGG GSPSSWQSPS PYAVHPPSTT PEYNPPTMSR HTSSHVAPSS 120 QHNIHHGLPY GSVQDRSSPS FQIPSFHNLS ATFSQQWSSS NSQWVGAESP QSDVHWPSDV 180 MSMGVSSPSS GGSRPAALAQ LSALVPTSDS CLNFHSPRRG VVTAPPGDGG GFRMVGANGV 240 IESDLQMGYQ DTASGRGGGS AASLGQYPAS GLGIPPNTDA ISLCDPLHVL LEGASDQNIP 300 RDGEGSSQTA EASVNISDWT DPEWMENFSD AYNENGPLDT NNRRVFQQPK RFHPPPRLIP 360 TKDLRTEQQH SGAASEGSPG ASRNSAPVGA TASSSAAASA AEAASVKTRL RWTPELHDKF 420 VDAVAQLGGP ERATPKAVLR VMGVNGITIY HVKSHLQKYR LIPEASSEDA RNDRKRNDNS 480 LGPMDLTSSL QMTQALQMQM EVQKRLHEQL EIQRELQLRI EAQGQSLKMM LEAQAKASGG 540 FIPRPELFCN ASLPAVASEV PKSQVVPAQP SQASETAPQQ STNGSSPVRE TSVKRARVEV 600 PSMVIVPQEQ FREAYNKQDG PKTGLFLHGC SAPPRDFAAS CQSPPSLPPP PQLSLPSRLL 660 LSIKGHSTDQ TDGPSSSTSA PPPPPPITDD DGGGGATPQW HDASPQGGCM LQQPGSMTST 720 TTSLQASV*

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MPSQMPPLLP SLAAHQQGYD SSGSPRASPG VSQAFPPAGA QFASQPFLPS STAALGGIQY  60
QVCGANSTQQ RSYYSVDTGG GSPSSWQSPS PYAVHPPSTT PEYNPPTMSR HTSSHVAPSS  120
QHNIHHGLPY GSVQDRSSPS FQIPSFHNLS ATFSQQWSSS NSQWVGAESP QSDVHWPSDV  180
MSMGVSSPSS GGSRPAALAQ LSALVPTSDS CLNFHSPRRG VVTAPPGDGG GFRMVGANGV  240
IESDLQMGYQ DTASGRGGGS AASLGQYPAS GLGIPPNTDA ISLCDPLHVL LEGASDQNIP  300
RDGEGSSQTA EASVNISDWT DPEWMENFSD AYNENGPLDT NNRRVFQQPK RFHPPPRLIP  360
TKDLRTEQQH SGAASEGSPG ASRNSAPVGA TASSSAAASA AEAASVKTRL RWTPELHDKF  420
VDAVAQLGGP ERATPKAVLR VMGVNGITIY HVKSHLQKYR LIPEASSEDA RNDRKRNDNS  480
LGPMDLTSSL QMTQALQMQM EVQKRLHEQL EIQRELQLRI EAQGQSLKMM LEAQAKASGG  540
FIPRPELFCN ASLPAVASEV PKSQVVPAQP SQASETAPQQ STNGSSPVRE TSVKRARVEV  600
PSMVIVPQEQ FREAYNKQDG PKTGLFLHGC SAPPRDFAAS CQSPPSLPPP PQLSLPSRLL  660
LSIKGHSTDQ TDGPSSSTSA PPPPPPITDD DGGGGATPQW HDASPQGGCM LQQPGSMTST  720
TTSLQASV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-22	407	460	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-22	407	460	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-22	407	460	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-22	407	460	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-22	407	460	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.12244	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371247.1	0.0	uncharacterized protein LOC112280231 isoform X2
TrEMBL	A0A2K1KU06	0.0	A0A2K1KU06_PHYPA; Uncharacterized protein
STRING	PP1S74_161V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-56	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_10940V3.9.p
Entrez Gene	5928394

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]