PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_8880V3.2.p
Common NamePHYPADRAFT_165193
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 865aa    MW: 93259.7 Da    PI: 7.9417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_8880V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07753794854
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + r RR+ri +++  L+ l+P+       K++ +++LekA+ Y++ L
  Pp3c2_8880V3.2.p 753 AARVRRERISERLKVLQALIPNG-----DKVDMVTMLEKAITYVQCL 794
                       6799******************5.....5***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.20E-8742799No hitNo description
PROSITE profilePS5088813.573745794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-11749807IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-10750804IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-9751800IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4753794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MDEATGALWG ACDTQPIQHV GVFNSPDIPA SLLPYHAETP FPWGSEPWDL PSRSDDITLM  60
SSSLVNDVPA YDSVMNLPRV SEDVHDLVGG NSKFRQNGQW GQPEFTYSAQ DPMQDLMNNQ  120
FIQYNSPVLA SNHLPQNFAT LDCPQGFNNK SFGTINPTIH NGAVPTTNVQ NSQYRSPLMV  180
PNCNPVTSTD VSITQCGVPS VPSQTAQYGG SSMVSNSMEM FGQAATRGIM ITSGLVGGCN  240
PNLGLMHLAK QQHAHSLPPS TNRDVSTSEV GSRSSVPNVA GGSFNSSQKG SASVMMSSLA  300
ASSHMHKMDA VSEEPKLVSF NPGPYVPAQK QQQSEQQDTL SNRIWADKTN QGKISSSPIP  360
IMGFEPRQQQ AMSKSSPVSN LGFEHGRQAA MSNSSSMNNM GFEQQMQQPA MSNSSVTNLG  420
FEQQRQQQAM SSSSPVTSLG FDPRLKQPMG SSPSVTIIGF DQRRKQPVSS SPSKPIMEFD  480
PSQKQPLSSP SPLSNMVFEQ RQLPTMGSSP PISISGFESR QQPSVSNSPP LSNLGFEQRQ  540
QSTVSNSPPL SNLGFEQRQH QPMSNASSIS NMSYEQQRNQ PALCNASPIS TLPFEQQRQQ  600
SVMSNPRSAK PDSGESVTKW PLRMDGGLGG CVGLPGNQKA PVMMQPETGT IKCPIPRNMP  660
GSAKIGPAVQ NSNPVLKRPL TVDDKKDQGG SMNKKPMQKA LGPQGCSRLE SISALAHQKV  720
SQSASGRALG PALNTNLKPR ARQGSANDPQ SIAARVRRER ISERLKVLQA LIPNGDKVDM  780
VTMLEKAITY VQCLELQIKM LKNDSIWPKA LGPLPNTLQE LLELAGPEFS GTESKNVEEP  840
PAKPKKSAPD VIEFDGNQPS ADKE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.164720.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1563940.0EF156394.1 Physcomitrella patens Rhd6-like 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361920.10.0mediator of RNA polymerase II transcription subunit 15-like isoform X1
TrEMBLA0A2K1L0R40.0A0A2K1L0R4_PHYPA; Uncharacterized protein
STRINGPP1S84_14V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-26ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]