PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pp3c2_6080V3.6.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 261aa MW: 27785.7 Da PI: 3.9328

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_6080V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.2e-06	235	258	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+ C+++F++ s + +H H Pp3c2_6080V3.6.p 235 YKCTGCDRTFTTESAMSQHVAAkH 258 9******************87666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.43E-5	227	257	No hit	No description
PROSITE profile	PS50157	10.741	235	260	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.0E-4	235	259	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0025	235	258	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	237	258	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MLMAAILCLE LSQRGDEDEE EDEEDEDEED AGVPVAVPIK ANGAAAEMLS KVTDKAAAAV 60 ANAIAKGIEK KVVKKQVIQD DSSDEEDDSE DSDDSDEDDG MGHPFVSDLA SESDDEFDAG 120 DDDSDEDMDE DDDDDDDDED DEDDESEEEE LKIETPKAGK KRPAAEPLKV ADKKSKTDSS 180 PLQAAAKGTK GEKQVTPSKD APKTPTDKGA KAKAPKGTPT APPTTPVSEK KFGQYKCTGC 240 DRTFTTESAM SQHVAAKHKA *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.3520	0.0	gametophore\| protonema

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368864.1	1e-165	histone deacetylase HDT2-like isoform X2
TrEMBL	A9RGA1	1e-90	A9RGA1_PHYPA; HD2 type histone deacetylase
STRING	PP1S7_389V6.1	7e-92	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c2_6080V3.6.p