PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_5990V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 395aa MW: 44346.2 Da PI: 9.4749 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.7 | 1.8e-17 | 130 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s++ + +l lp +f++++ ++++ ++lede++ +We + ++ + l++GW++F +++L +gD+++F+l+g+++f + Pp3c2_5990V3.1.p 130 FVKPMLHSHTASGFWLGLPSNFCKQYL--PHRDERIVLEDEQNMEWECLY--LAHK--VGLSGGWRGFSLDHELVDGDSCIFELVGSTRF--K 214 89*********************9994..235557***************..7776..55*************************98888..9 PP EEEE- CS B3 94 vkvfr 98 v +fr Pp3c2_5990V3.1.p 215 VYIFR 219 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-25 | 124 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 125 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-25 | 128 | 219 | No hit | No description |
Pfam | PF02362 | 1.4E-15 | 130 | 219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 130 | 221 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.733 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MAMVASSLGL SYEDARKQRV EENNRRMAEL GLFDLSKSLK EVKNVASARK PLAKRKVSSQ 60 ELTTEARRSG RNAGKMVSYR EQLDMMPGMR MRCGTRDRQS LARRYLSDAA RMAAVDAAEE 120 VYKDIKNPAF VKPMLHSHTA SGFWLGLPSN FCKQYLPHRD ERIVLEDEQN MEWECLYLAH 180 KVGLSGGWRG FSLDHELVDG DSCIFELVGS TRFKVYIFRC EEQFEGGEKA DGIEGGENVS 240 HKHTDTGNKK KTGGMKYYKK SPASAPPEIG KPRRLSTSTR KLDLEDKEED DDSPKASEMI 300 KKEVHTDLDS PSKPSKRRCV KEDGDSKVGE VHQSKKKDVR SMKQKEGCKE VVDLDSKVGG 360 DDAHKYPAQS NGNQLEIRSF GRITRSSIAR SLAK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024400952.1 | 0.0 | B3 domain-containing protein Os06g0194400-like | ||||
TrEMBL | A0A2K1L0E7 | 0.0 | A0A2K1L0E7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S7_383V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-44 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_5990V3.1.p |