PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_5990V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 395aa    MW: 44346.2 Da    PI: 9.4749
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_5990V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-17130219198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s++ +  +l lp +f++++   ++++  ++lede++ +We  +    ++  + l++GW++F  +++L +gD+++F+l+g+++f  +
  Pp3c2_5990V3.1.p 130 FVKPMLHSHTASGFWLGLPSNFCKQYL--PHRDERIVLEDEQNMEWECLY--LAHK--VGLSGGWRGFSLDHELVDGDSCIFELVGSTRF--K 214
                       89*********************9994..235557***************..7776..55*************************98888..9 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v +fr
  Pp3c2_5990V3.1.p 215 VYIFR 219
                       99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-25124220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-22125219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-25128219No hitNo description
PfamPF023621.4E-15130219IPR003340B3 DNA binding domain
SMARTSM010191.1E-22130221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.733130221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAMVASSLGL SYEDARKQRV EENNRRMAEL GLFDLSKSLK EVKNVASARK PLAKRKVSSQ  60
ELTTEARRSG RNAGKMVSYR EQLDMMPGMR MRCGTRDRQS LARRYLSDAA RMAAVDAAEE  120
VYKDIKNPAF VKPMLHSHTA SGFWLGLPSN FCKQYLPHRD ERIVLEDEQN MEWECLYLAH  180
KVGLSGGWRG FSLDHELVDG DSCIFELVGS TRFKVYIFRC EEQFEGGEKA DGIEGGENVS  240
HKHTDTGNKK KTGGMKYYKK SPASAPPEIG KPRRLSTSTR KLDLEDKEED DDSPKASEMI  300
KKEVHTDLDS PSKPSKRRCV KEDGDSKVGE VHQSKKKDVR SMKQKEGCKE VVDLDSKVGG  360
DDAHKYPAQS NGNQLEIRSF GRITRSSIAR SLAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400952.10.0B3 domain-containing protein Os06g0194400-like
TrEMBLA0A2K1L0E70.0A0A2K1L0E7_PHYPA; Uncharacterized protein
STRINGPP1S7_383V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-44B3 family protein