PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_4771V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13567.6 Da PI: 8.2885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62.4 | 1.2e-19 | 6 | 58 | 34 | 86 |
DUF260 34 hklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +FG++nv+k+l++lp+ +red ++sl+yeA+ar++dPvyG+vg i+ lqqq Pp3c2_4771V3.1.p 6 TGVFGVANVTKMLHDLPPPHREDCVNSLAYEADARVQDPVYGCVGAISILQQQ 58 569***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.185 | 1 | 74 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-18 | 5 | 58 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MRSQATGVFG VANVTKMLHD LPPPHREDCV NSLAYEADAR VQDPVYGCVG AISILQQQDF 60 TNLLNPLLWP PTTLNLPTLI ALLHQLIRNI KKHQPINNHN PLLHHVRTQG LHVHSTSYGF 120 Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-21 | 8 | 58 | 46 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-21 | 8 | 58 | 46 | 96 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1L087 | 4e-84 | A0A2K1L087_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-22 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_4771V3.1.p |