PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_3370V3.5.p
Common NamePpABI3A
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 647aa    MW: 71355.2 Da    PI: 7.1692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_3370V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16424519295
                       EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       +k+l psdv+++gr++lpkk ae h     +   e++ l +ed  sg  W++++++  ++ks++y+l+ ++ eFvk+++LkegD ++++  ++
  Pp3c2_3370V3.5.p 424 QKELRPSDVGNLGRIILPKKEAEVHlpilALR--EGVSLLMEDfDSGYCWNIRYRFwpNNKSRMYLLE-NTGEFVKSHHLKEGDLLILY--RN 511
                       7999***********************76555..7889*****9999*******99777777777777.********************..56 PP

                       SEE..EEE CS
                B3  88 sefelvvk 95 
                       +++++v++
  Pp3c2_3370V3.5.p 512 EQGNYVLR 519
                       88877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-26420518IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-21422516IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.221423524IPR003340B3 DNA binding domain
SMARTSM010193.4E-15423524IPR003340B3 DNA binding domain
PfamPF023622.0E-13424519IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MVLLSSVEAY QQDRLGLLKR SEPLREPTGL RSWIDIPLGL EDYRHCASTF ACNKDDQNFD  60
MRGLSRIGFP NPTINLEIQG IGDFYSQARS PVASYSSGTS NDCNSAGTST VDSTEDASLS  120
SYLMDGNVRA MLKKVTVNEG VLNQTIQSLG GGEKGLKELM AYIMAWVKEQ NGENCDKLFL  180
SQNLEKLNPP QMNPTFGFAP SLANNIPTCN LTLGTAACDQ RSDNLRRTFD TVQSSDDTQD  240
LNQVIQCSKS RRLMVEGEVD SSYRADAYPR QGTFLNARGS VSEDFHSTKL ESNMTNPSPI  300
DAVVLQGMSS ELGTLTQQAP CSQFGLSFNP GQNELNRTLA ASTRAARRNR LSRQRQSVQQ  360
SHRRSPTSGT TVTSGGCGLW SASPPALDFM NTRWNHPGTQ MPLGASVKSE KKGNTTDMLT  420
FLLQKELRPS DVGNLGRIIL PKKEAEVHLP ILALREGVSL LMEDFDSGYC WNIRYRFWPN  480
NKSRMYLLEN TGEFVKSHHL KEGDLLILYR NEQGNYVLRG KKKVPSETRV AYGSQHRTAH  540
SLACRFSEGI PNKIEESFKD RDFGGGLTET ASGKLKIEVK AEPLVVQPST DGDKFEDVMS  600
NIGSSFATEG PLQPLERGGC PSLISVFRRT RSMSSLQEDA ITNCLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-344195271110B3 domain-containing transcription factor FUS3
6j9b_D6e-344195271110B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.34650.0gametophore| protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2334190.0AB233419.1 Physcomitrella patens PpABI3A mRNA for transcription factor ABI3-like, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360671.10.0B3 domain-containing transcription factor ABI3-like isoform X1
TrEMBLQ2ABS00.0Q2ABS0_PHYPA; Transcription factor ABI3-like
STRINGPP1S7_115V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-39B3 family protein