PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_3370V3.3.p | ||||||||
Common Name | PpABI3A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | B3 | ||||||||
Protein Properties | Length: 587aa MW: 64460.4 Da PI: 7.8676 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.1 | 1.2e-16 | 364 | 459 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +k+l psdv+++gr++lpkk ae h + e++ l +ed sg W++++++ ++ks++y+l+ ++ eFvk+++LkegD ++++ ++ Pp3c2_3370V3.3.p 364 QKELRPSDVGNLGRIILPKKEAEVHlpilALR--EGVSLLMEDfDSGYCWNIRYRFwpNNKSRMYLLE-NTGEFVKSHHLKEGDLLILY--RN 451 7999***********************76555..7889*****9999*******99777777777777.********************..56 PP SEE..EEE CS B3 88 sefelvvk 95 +++++v++ Pp3c2_3370V3.3.p 452 EQGNYVLR 459 88877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-26 | 360 | 458 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-22 | 362 | 456 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.4E-15 | 363 | 464 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.221 | 363 | 464 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 364 | 459 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MRGLSRIGFP NPTINLEIQG IGDFYSQARS PVASYSSGTS NDCNSAGTST VDSTEDASLS 60 SYLMDGNVRA MLKKVTVNEG VLNQTIQSLG GGEKGLKELM AYIMAWVKEQ NGENCDKLFL 120 SQNLEKLNPP QMNPTFGFAP SLANNIPTCN LTLGTAACDQ RSDNLRRTFD TVQSSDDTQD 180 LNQVIQCSKS RRLMVEGEVD SSYRADAYPR QGTFLNARGS VSEDFHSTKL ESNMTNPSPI 240 DAVVLQGMSS ELGTLTQQAP CSQFGLSFNP GQNELNRTLA ASTRAARRNR LSRQRQSVQQ 300 SHRRSPTSGT TVTSGGCGLW SASPPALDFM NTRWNHPGTQ MPLGASVKSE KKGNTTDMLT 360 FLLQKELRPS DVGNLGRIIL PKKEAEVHLP ILALREGVSL LMEDFDSGYC WNIRYRFWPN 420 NKSRMYLLEN TGEFVKSHHL KEGDLLILYR NEQGNYVLRG KKKVPSETRV AYGSQHRTAH 480 SLACRFSEGI PNKIEESFKD RDFGGGLTET ASGKLKIEVK AEPLVVQPST DGDKFEDVMS 540 NIGSSFATEG PLQPLERGGC PSLISVFRRT RSMSSLQEDA ITNCLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 3e-34 | 359 | 467 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 3e-34 | 359 | 467 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3465 | 0.0 | gametophore| protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB233419 | 0.0 | AB233419.1 Physcomitrella patens PpABI3A mRNA for transcription factor ABI3-like, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024360679.1 | 0.0 | B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
TrEMBL | Q2ABS0 | 0.0 | Q2ABS0_PHYPA; Transcription factor ABI3-like | ||||
STRING | PP1S7_115V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 9e-40 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_3370V3.3.p |