PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_31200V3.1.p
Common NamePHYPADRAFT_172669
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 399aa    MW: 43858.7 Da    PI: 6.8389
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_31200V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-10197242454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h  rEr+RRd++ s+f+ L +llP       +K + ++i+ + +eY+k+L
  Pp3c2_31200V3.1.p 197 DHILRERQRRDDMTSKFAILESLLPIG-----TKRDRSTIVDESIEYVKNL 242
                        6999*********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.224193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-13197259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11197256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-9198247No hitNo description
SMARTSM003532.6E-8199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLTLDNMGLS RGGFRSDLYS RDSFGFGLDA SSLEVVEGNV ALQLNDFLHN SYTMQQGGVQ  60
NQCGSYDGLI ARSGSYAGLA SLGFSQPDID RGILFDDLPP VVDHENLHDY EPVSNALFSS  120
TSSVELGSSH VPGLPSASLQ SQVTTEQRDG GEGLTSRNGL KRGRSLDNEI DMQPWKKLDK  180
TSRSIGPKGK RMNEQADHIL RERQRRDDMT SKFAILESLL PIGTKRDRST IVDESIEYVK  240
NLHHRIKELQ DRKMLLIQSA ATTSKDNTAP SCRKELIMSV QPGSPSKQNE KQTVVPKPPI  300
SQEELSRIHS FLRSCLEKVE VHADLPNQVV IEMVCKPQPR LQSNILQCLE CLSLDVKQCS  360
FTKIAHRLIC VITAKPQEAT APTSGIVAAL KCALQGSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.50520.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368232.10.0transcription factor EGL1-like
TrEMBLA9TYD90.0A9TYD9_PHYPA; Predicted protein
STRINGPP1S371_62V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9572213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-10bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]