PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_23660V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family RAV
Protein Properties Length: 940aa    MW: 102762 Da    PI: 7.1302
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_23660V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58.1e-14247295155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV    ++grW A+I++      ++r++lg+f t+eeAa+a++ a+ k++g
  Pp3c2_23660V3.1.p 247 SQFRGVV-PQSNGRWGAQIYEK-----HQRIWLGTFNTEEEAARAYDTAAIKFRG 295
                        6899996.6779*********3.....5************************998 PP
2B398.63.8e-31412512199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+ tpsdv+k++rlv+pk++ae++        +++ ++tl++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F++  
  Pp3c2_23660V3.1.p 412 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlsA-NSP-GQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVSFERG- 500
                        89***************************9853.433.459************************************************43. PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         ++ el++ ++rk
  Pp3c2_23660V3.1.p 501 -RNHELYIDFRRK 512
                        .667779999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-17247303IPR016177DNA-binding domain
CDDcd000181.21E-25247305No hitNo description
SMARTSM003801.1E-30248309IPR001471AP2/ERF domain
PROSITE profilePS5103220.521248303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-21248303IPR001471AP2/ERF domain
PRINTSPR003679.4E-5249260IPR001471AP2/ERF domain
PfamPF008477.7E-8249295IPR001471AP2/ERF domain
PRINTSPR003679.4E-5269285IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.6E-42403513IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-30408512IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-27410511No hitNo description
SMARTSM010191.4E-28412513IPR003340B3 DNA binding domain
PROSITE profilePS5086315.679412513IPR003340B3 DNA binding domain
PfamPF023626.7E-28412512IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MWSKPASRSS SEPHHGPDVT LRLNNFDTLV ASSSDSDVSS FKIVECPSQG REEASTSVVI  60
RETNPASPIP KFYTIEEKTA MLGVAEAAAA NTLQVHGIPR FQRHIDHDRS RLHDSSMLRT  120
SGKDSENCFR ADAEEHRAYV ASNLESFGER SHPLDLLGSR LEAEFSRGAN LKQWPLGSRN  180
VGQRCGSGEL ERTQSGPSAF LGSGSLDTEQ RGSLERTHSG PSFSGSGDSE YGDDRGREQS  240
NSKLPSSQFR GVVPQSNGRW GAQIYEKHQR IWLGTFNTEE EAARAYDTAA IKFRGRDAMT  300
NFRPVTDSEY ESEFLRSFSK EQIVEMLRRH TYDEELDQCK KVFNMDAAAN PVSARRRVLE  360
MCRSSNPGTR LSVGSFSLLQ NTFSADTSTT LAPPNLPRDE PRESSPTREH LFDKAVTPSD  420
VGKLNRLVIP KQHAERCFPL DLSANSPGQT LSFEDVSGKH WRFRYSYWNS SQSYVLTKGW  480
SRFVKEKKLD AGDIVSFERG RNHELYIDFR RKQITAGGTS TSDRSSFRSA WSGPCNNAYA  540
PSNGPVSPLN SRMWQPFSFS VPHVTVTSSG IQPSSMYGSI YNQMMQSARG TSAASGDLGS  600
VQDSAIPSMA GSCLNLDLQH SPLKCHAATE DFILHIDRPL RQSADMDGGS NIHDRSLVAS  660
SSSTSSQSEE APSTSSGTRL FGVDLERAAP LACKVSPLQS IPSFTSSALQ SKLSEGHESS  720
QGNLKTIHDG GNIPPSASLS ALTSGEFLSF RLGNAFKSLQ CKHPVEQSSP ENGGAPVRLS  780
LQASTSSSSG HRGSSPLKST AMTEGEDPKA RSSTESVASA LDSNSSRSSP MLLEKRKREN  840
SNRDYMQGCS DQADGAANVP LTLAHSEFRS SLEQARHAWH KHEDDASAEV QTSVKRHCSP  900
IQASLLRQGS GTTEQSDFLP KPDLVQEKQK PQYDSSNLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-514085124113B3 domain-containing transcription factor NGA1
5os9_B2e-514085124113B3 domain-containing transcription factor NGA1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369138.10.0uncharacterized protein LOC112279179 isoform X2
TrEMBLA0A2K1L2S10.0A0A2K1L2S1_PHYPA; Uncharacterized protein
STRINGPP1S135_69V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-90related to ABI3/VP1 1