PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_22070V3.2.p | ||||||||
Common Name | PHYPADRAFT_166815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 810aa MW: 84835 Da PI: 10.336 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.5e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c2_22070V3.2.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89******************988 PP | |||||||
2 | zf-C2H2 | 12 | 0.00065 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c2_22070V3.2.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 85 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.33E-7 | 85 | 108 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 127 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 150 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.33E-7 | 157 | 182 | No hit | No description |
SMART | SM00355 | 140 | 162 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
MTLSNLTSAS AGEVSVSSGN RMDGTNTGMP PTSSTPPTPT TTTVTVSSGQ PLTVAVKRKR 60 NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK 120 EIRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV SAGKQGGGQP DGLMGAGSSS 240 ISVMGAPSSP HGNNVGRMSG DPLASVVPLA SRPGGGMPQS MVGLGGLSEG GHSLLPRWSG 300 NPGSSPVSRT GTGLSLWLGP GPGPPGNQHQ MHQLLSGSDG NSSFLMQPHK GMQGGPGLPG 360 MMNPLDYDVP QAPRPSSGHL PLTPRGSLFA HLFASGNGMH GLQGSSPSQS GSTAGIGISG 420 FSDLTAGANR MERGSPTSSA GLTSNSSSGN TNGAGNLSSV SPLFNAHHQQ QQHTASAQMS 480 ATALLQKAAQ MGATASNTSL LRGFGLGGTD SSSMGIWQGQ RQEQQSQQQS QQQQHQSQQQ 540 HQSQQQQQSQ SQPQLQHQQQ QQQQSQSQPQ LQQQPQQQQQ QQQSQTQPQL QQQQQGRAGD 600 LPLNSMCNMV NHPLMRRPGD LQSVSQGLGG TSPGQSNNFG GGQGRLSDSS ANVQDFMNSL 660 SGGAGIFGGP LGNMPSMFGP SSNNMGGMLP PSTHRMSPSE VLANSAFAGG QGVLQGLSPS 720 SLLPGLGGSS RGENDGSDRF TRDFLGVGRA SGMTAAGGGM GRTLSQRDLA SITSLGPGVD 780 LGAFFNQREN LRSVNASGHS PGKSWDAAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-36 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 2e-36 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13110 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362340.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
TrEMBL | A9SVP8 | 0.0 | A9SVP8_PHYPA; Predicted protein | ||||
STRING | PP1S125_69V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-113 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_22070V3.2.p |
Entrez Gene | 5933633 |
Publications ? help Back to Top | |||
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