PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_20860V3.1.p
Common NamePHYPADRAFT_168075
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 724aa    MW: 78256.8 Da    PI: 7.3224
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_20860V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08614662348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E   lv++v++ Ggg W+ I +        Rt+ ++k++w+++l
  Pp3c2_20860V3.1.p 614 PWTLREVMTLVEGVARCGGGKWADIKKLAFsnvGYRTAVDLKDKWRNLL 662
                        8**************************98888889************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.135607666IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-12608664IPR009057Homeodomain-like
SMARTSM007171.7E-7611664IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-15613666IPR009057Homeodomain-like
CDDcd116602.53E-20613663No hitNo description
PfamPF002492.0E-6614662IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MLEAVEDGSD ARLVSSGREG SPAVASKPIV DDRLVYKLVK VGDDGSVLPA TEDEVFQSLV  60
SGSGNVLSSF NPGGRDRGED EEEDGEDDED DEETEYDTDE DEPDERARNI PLQDLAAQRQ  120
KLRARLQVLD SMLLQVDAEE QQRLAAEIDG AGNDLGHEGN ISPYLSAGDG SGDKRHRRPN  180
PKYFGFEAGE DGASGQPALS SSSGEPTLTP TNETAVSPRV TSGWRSNRSS MQSASTHRAR  240
STVTQKLFAR TGTKVVSPGS SVSGISRAHE EVSLDNLSIR ELHEAFRATY GRDTSVKDKH  300
WLKRQISAGW MKQRDAAFKS QLPVPGKLKT RLDQDNHAEQ PLPSLGLISL RGIDNDAANE  360
ALSEGAGNGA ERVKHSAWNG LESQRSRHGM ATPAIVSIGG KLDGYNTGSL SSSDAGHGRI  420
AIYGEVVNTG EPIGGKRLRK PNRKYIEDEA EAASGDVPNN DNRSLYGEFG VNGMDSFANY  480
SWRTVETDGP ADMMGRHGTL RGSTLRNTSN KSMSASQRPK LIGGIAKRKV EGRAAKLVKM  540
AHSARAARQD TERAVRKDGL SELNEEASAL LPVVPFDPSA VLQPLPLDSR PENDLPIATV  600
PTANGGTRRK HHRPWTLREV MTLVEGVARC GGGKWADIKK LAFSNVGYRT AVDLKDKWRN  660
LLRASRAQLH PAKQGERKKQ FTAAIPAPIL ARVRELAALQ NQISPTTETG SSTSRSGRTV  720
HRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.166020.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024360688.10.0uncharacterized protein LOC112275004
TrEMBLA0A2K1L2G60.0A0A2K1L2G6_PHYPA; Uncharacterized protein
STRINGPP1S165_67V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-29TRF-like 6
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]