PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c2_20240V3.6.p

Common Name

PHYPADRAFT_168056

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C2H2

Protein Properties

Length: 684aa MW: 70506.2 Da PI: 9.8676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c2_20240V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c2_20240V3.6.p 6 FVCEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.3	0.00053	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c2_20240V3.6.p 82 WKCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.4E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.28E-7	5	28	No hit	No description
SMART	SM00355	0.017	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-4	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.28E-7	77	102	No hit	No description
SMART	SM00355	140	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVRKRVYICP EPSCVHHDPS 60 RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAEESARV SAGKQGGGQP DGLTGPGSSS MSVVGAPSSP PHGNNVGPVS 180 GDPLASVVPL ASRSGGLPPS MAGLGGLSEL PRWCGAPGGS GSVPRAGTGL SLWLGPDPGP 240 PGNQQQMHQL LSGSDGNSSF LLQAQKGMQG GADLPGILNP LDYDVPQAPR PSSGQLPLTP 300 SGSLLAHLFA SGNGLQGFQG SSPSQSGATA GMGISGFSDF TGGASRMERG LTAAGMSPTS 360 SAGLTSNSSS GNTNSGGNLS SVSPLFKAQQ QQQQHTASAQ MSATALLQKA AQMGATASNS 420 SLLRGFGLGG ADSNSLGIWQ GHRQEQQQQQ SQQSHPQPQQ QQSQSQPQPQ QQQGRTGDLL 480 LNNMVNHALI RRPGDLQNVS QGLGGSSLGQ SNSFGGGQGR LSDSSTNVQD LMNSLSGGAG 540 LFGGPLSSMP SMFGPSSTSM GGMLPPSTQR ISPSEGLANS TFTGGPGVLQ GMGPSSLLPG 600 LGGSSRGEND GSDRFTRDFL GVGGASGMTA VGGGMGRTLS QRDLASITSL GPGVDLGAFF 660 NQGENLRSVN ASGRSPGKSW DAT*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVRKRVYICP EPSCVHHDPS  60
RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAEESARV SAGKQGGGQP DGLTGPGSSS MSVVGAPSSP PHGNNVGPVS  180
GDPLASVVPL ASRSGGLPPS MAGLGGLSEL PRWCGAPGGS GSVPRAGTGL SLWLGPDPGP  240
PGNQQQMHQL LSGSDGNSSF LLQAQKGMQG GADLPGILNP LDYDVPQAPR PSSGQLPLTP  300
SGSLLAHLFA SGNGLQGFQG SSPSQSGATA GMGISGFSDF TGGASRMERG LTAAGMSPTS  360
SAGLTSNSSS GNTNSGGNLS SVSPLFKAQQ QQQQHTASAQ MSATALLQKA AQMGATASNS  420
SLLRGFGLGG ADSNSLGIWQ GHRQEQQQQQ SQQSHPQPQQ QQSQSQPQPQ QQQGRTGDLL  480
LNNMVNHALI RRPGDLQNVS QGLGGSSLGQ SNSFGGGQGR LSDSSTNVQD LMNSLSGGAG  540
LFGGPLSSMP SMFGPSSTSM GGMLPPSTQR ISPSEGLANS TFTGGPGVLQ GMGPSSLLPG  600
LGGSSRGEND GSDRFTRDFL GVGGASGMTA VGGGMGRTLS QRDLASITSL GPGVDLGAFF  660
NQGENLRSVN ASGRSPGKSW DAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-36	78	142	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-36	78	142	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2328	0.0	protonema

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00125	DAP	Transfer from AT1G03840	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024365599.1	0.0	protein indeterminate-domain 1-like isoform X1
TrEMBL	A0A2K1L2D8	0.0	A0A2K1L2D8_PHYPA; Uncharacterized protein
STRING	PP1S165_3V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-96	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Pp3c2_20240V3.6.p
Entrez Gene	5936824

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]