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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_20240V3.5.p | ||||||||
Common Name | PHYPADRAFT_168056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | C2H2 | ||||||||
Protein Properties | Length: 715aa MW: 73820 Da PI: 9.9474 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.1e-05 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pp3c2_20240V3.5.p 86 FVCEICNKGFQRDQNLQLHRRGH 108 89******************988 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00056 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pp3c2_20240V3.5.p 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.2E-7 | 85 | 108 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 85 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 127 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 150 | 183 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.2E-7 | 157 | 182 | No hit | No description |
SMART | SM00355 | 140 | 162 | 182 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MTLSNLTSAS AGEASVSSGN HADGTNPGMP PTPSTPATPT TTTVTVSSGQ PLGVPVKRKR 60 NLPGTPDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK 120 EVRKRVYICP EPSCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV SAGKQGGGQP DGLTGPGSSS 240 MSVVGAPSSP PHGNNVGPVS GDPLASVVPL ASRSGGLPPS MAGLGGLSEL PRWCGAPGGS 300 GSVPRAGTGL SLWLGPDPGP PGNQQQMHQL LSGSDGNSSF LLQAQKGMQG GADLPGILNP 360 LDYDVPQAPR PSSGQLPLTP SGSLLAHLFA SGNGLQGFQG SSPSQSGATA GMGISGFSDF 420 TGGASRMERG LTAAGMSPTS SAGLTSNSSS GNTNSGGNLS SVSPLFKAQQ QQQQHTASAQ 480 MSATALLQKA AQMGATASNS SLLRGFGLGG ADSNSLGIWQ GHRQEQQQQQ SQQSHPQPQQ 540 QQSQSQPQPQ QQQGRTGDLL LNNMVNHALI RRPGDLQNVS QGLGGSSLGQ SNSFGGGQGR 600 LSDSSTNVQD LMNSLSGGAG LFGGPLSSMP SMFGPSSTSM GGMLPPSTQR ISPSEGLANS 660 TFTGGMGRTL SQRDLASITS LGPGVDLGAF FNQGENLRSV NASGRSPGKS WDAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 158 | 222 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2328 | 0.0 | protonema |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365599.1 | 0.0 | protein indeterminate-domain 1-like isoform X1 | ||||
TrEMBL | A0A2K1L2D8 | 0.0 | A0A2K1L2D8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S165_3V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-114 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_20240V3.5.p |
Entrez Gene | 5936824 |
Publications ? help Back to Top | |||
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