PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_17030V3.2.p
Common NamePHYPADRAFT_172534
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 295aa    MW: 33187.6 Da    PI: 8.9942
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_17030V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.6e-13192217126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yktelCr + +tG+C+y ++C+FaHg
  Pp3c2_17030V3.2.p 192 YKTELCRSWEETGHCRYAAKCQFAHG 217
                        9************************8 PP
2zf-CCCH406.6e-13230254125
                        --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                        yktelCr + +tG C+yG rC+F+H
  Pp3c2_17030V3.2.p 230 YKTELCRSYTETGLCSYGKRCRFIH 254
                        9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-18187224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-9190224IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394191219IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-14225255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-9226255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178229257IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-8229256IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10230254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSFPYMQDGS GVSPPGEKLY SAYSQSILRK GRGMSEKNFE FIFSDTSSMG MKFSVGVPYS  60
STTTEEDFQE LEQESSVDSS STRCILQRKP RKGRKMLLHT PGNVCGYDPE KFGICNRSVS  120
FLNPVQALRN LQHERMHSPG INVHFRCTHR LHAPSIIRSK PAINHAGSEL PLCSPSAPSD  180
EIEHPQIKEG LYKTELCRSW EETGHCRYAA KCQFAHGNDD LRPVPRHPKY KTELCRSYTE  240
TGLCSYGKRC RFIHTSGTNT QVFLESRNLE KKGSRRLSIF QQLSGAGEMP PRQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-23192256468Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024364440.10.0zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A2K1L1V70.0A0A2K1L1V7_PHYPA; Uncharacterized protein
STRINGPP1S358_43V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-24C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]