PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c2_11580V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 415aa MW: 47293.9 Da PI: 8.4689 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.3e-12 | 314 | 354 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 y+GVr+ ++g+Wv+eIr+ g + +++lg+f+t++eAa a +a Pp3c2_11580V3.1.p 314 YRGVRR--RNGKWVSEIRV----GqTNEKVWLGSFDTEKEAALAFDA 354 9***85..47*********....5446**********9999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.1E-13 | 313 | 376 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.106 | 313 | 370 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-19 | 313 | 372 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-11 | 313 | 371 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.59E-16 | 314 | 372 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MIEKKPSRWG LLSRQASVLG RFKNKLRLKK LEWKRFYEQF WGPAPPNPAS QDDFNEWPDS 60 CYSTEGSHTS KNNSLHLDSS SSEDYWALFR QEQIENPPPF QLGDRSFVPE ICPVVPSTFQ 120 QDSGMYAQSE QFHLTQGRGD FVTTALPGSP VVGTTEASLN GQQQLPTPRL DHTNSFDSNP 180 LSVDDYAETE NDAISEWLQL DLPKSEQQGS SHLNTDIMRS MNTRYSGEAS TMPLTPEARL 240 QWFKQFFELG AEEALTRPHQ ASTELGWRVM VRIVCACRKL SRLIRRRRVD EIPPGRAIVR 300 KRNRGFGENR SQLYRGVRRR NGKWVSEIRV GQTNEKVWLG SFDTEKEAAL AFDAGKYHCS 360 SQRRCSYNFP ESPLLLGPPV NIHELSPADR KRTIQKLAED HVKACTSDQI RSTN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024368685.1 | 0.0 | uncharacterized protein LOC112278963 isoform X1 | ||||
Refseq | XP_024368686.1 | 0.0 | uncharacterized protein LOC112278963 isoform X1 | ||||
TrEMBL | A0A2K1L156 | 0.0 | A0A2K1L156_PHYPA; Uncharacterized protein | ||||
STRING | PP1S183_112V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 5e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c2_11580V3.1.p |