PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_7560V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 425aa MW: 47668.4 Da PI: 5.6294 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.9 | 2.3e-54 | 21 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++kv++ ++e+ ++i vd +++ePwdLp k+k +ekewyf+s rd+ky+tg+r+nratk+gyWkatgkd++v Pp3c27_7560V3.2.p 21 LPPGFRFHPTDEELVTFYLANKVRDPRFEV-RTICVVDFNECEPWDLPGKAKVGEKEWYFYSLRDRKYPTGTRTNRATKTGYWKATGKDRDV 111 79****************************.88***************99999*************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfy grap+g+kt+W+mheyrle Pp3c27_7560V3.2.p 112 MNSgTHSLVGMKKTLVFYMGRAPRGVKTNWIMHEYRLE 149 **966677****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-62 | 19 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.027 | 21 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MASMCNVSKI VGIRQDCNME LPPGFRFHPT DEELVTFYLA NKVRDPRFEV RTICVVDFNE 60 CEPWDLPGKA KVGEKEWYFY SLRDRKYPTG TRTNRATKTG YWKATGKDRD VMNSGTHSLV 120 GMKKTLVFYM GRAPRGVKTN WIMHEYRLER DSTSRFHGQQ SLGPKQDEWV ICRVFQKFIG 180 NKKSGVTHGD SPYQLIDSHS ALQRDSSPNP AVTDSGECDA CTGTDSCYNC QDSYPQDVSL 240 ALGDVATALP VQWVHTMPNS KVPGSISMVP SAMDTDNLMK ETYYNQNAIN SGMLNHASIP 300 QSIFAHPSTP MRCFDNLLGN NRIRAKQEAS YTSNEGEDEA QSSGKLNLDC IAWPSDNVLY 360 DQEIPCDSPL SPLQTVTEES GQLSCLTDGT FGDDHQSRML RYRWYSSLPE VAGCIDGLQP 420 EWAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-53 | 18 | 177 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-53 | 18 | 177 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-53 | 18 | 177 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-53 | 18 | 177 | 14 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-53 | 18 | 177 | 17 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-53 | 18 | 177 | 14 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-53 | 18 | 177 | 14 | 165 | NAC domain-containing protein 19 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11952 | 3e-88 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367536.1 | 0.0 | NAC domain-containing protein 59-like | ||||
Refseq | XP_024367537.1 | 0.0 | NAC domain-containing protein 59-like | ||||
TrEMBL | A0A2K1IB31 | 0.0 | A0A2K1IB31_PHYPA; Uncharacterized protein | ||||
STRING | PP1S164_37V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 5e-75 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_7560V3.2.p |