PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_7430V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 46234.8 Da PI: 8.6906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173 | 8.6e-54 | 16 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yL++k+++ +++ vi+evd+yk++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ Pp3c27_7430V3.6.p 16 LPPGFRFHPTDEELVLHYLRRKANSGVFQI-PVIAEVDLYKFDPWDLPNKALFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPI 106 79***************************9.89***************8888899************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl Pp3c27_7430V3.6.p 107 HMSkGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 143 98757778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-64 | 8 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.691 | 16 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MVIMKPTRGS IDQLRLPPGF RFHPTDEELV LHYLRRKANS GVFQIPVIAE VDLYKFDPWD 60 LPNKALFGER EWYFFSPRDR KYPNGARPNR AAASGYWKAT GTDKPIHMSK GHSKVGVKKA 120 LVFYRGKAPK GEKTNWIMHE YRLAEGVSTS THHPRRNSSR LDDWVLCRIY EKTSHAQRAS 180 KEYENSSVEE VLASLPDSVD DLRFVLPRLN SLNGNLELAV QQEALGDNRL TEKASENGCL 240 SANFDSIQKG TMSNNPGSLL TLANDWKLQQ SMTINHDTLE SSRLMGHLAS TSSVHRPALS 300 TRPMANSFMA QFRHPPRSYH LCPSSGQEKI LPAGHSTFDE EVQSTLRSSA MGYTNARSSN 360 DQGLETMFSA VSYEDRSNPS YGGPAVTEHS VYPAIPTPPS MDFNFSYAGD FN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-79 | 11 | 178 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-79 | 11 | 178 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-79 | 11 | 178 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-79 | 11 | 178 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-79 | 11 | 178 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-79 | 11 | 178 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-79 | 11 | 178 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2655 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367538.1 | 0.0 | NAC transcription factor 32-like isoform X1 | ||||
Swissprot | Q93VY3 | 3e-84 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A2K1IB16 | 0.0 | A0A2K1IB16_PHYPA; Uncharacterized protein | ||||
STRING | PP1S164_25V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-86 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_7430V3.6.p |
Publications ? help Back to Top | |||
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