PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c27_7430V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NAC

Protein Properties

Length: 359aa MW: 39811.3 Da PI: 8.3174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c27_7430V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.9	4.3e-32	14	89	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl Pp3c27_7430V3.5.p 14 GEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIHMSkGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 89 689**********************************98757778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.166	1	118	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-38	9	118	IPR003441	NAC domain
Pfam	PF02365	1.3E-15	17	89	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MLNCATSTDK ALFGEREWYF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIHMSKGHSK 60 VGVKKALVFY RGKAPKGEKT NWIMHEYRLA EGVSTSTHHP RRNSSRLDDW VLCRIYEKTS 120 HAQRASKEYE NSSVEEVLAS LPDSVDDLRF VLPRLNSLNG NLELAVQQEA LGDNRLTEKA 180 SENGCLSANF DSIQKGTMSN NPGSLLTLAN DWKLQQSMTI NHDTLESSRL MGHLASTSSV 240 HRPALSTRPM ANSFMAQFRH PPRSYHLCPS SGQEKILPAG HSTFDEEVQS TLRSSAMGYT 300 NARSSNDQGL ETMFSAVSYE DRSNPSYGGP AVTEHSVYPA IPTPPSMDFN FSYAGDFN*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MLNCATSTDK ALFGEREWYF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIHMSKGHSK  60
VGVKKALVFY RGKAPKGEKT NWIMHEYRLA EGVSTSTHHP RRNSSRLDDW VLCRIYEKTS  120
HAQRASKEYE NSSVEEVLAS LPDSVDDLRF VLPRLNSLNG NLELAVQQEA LGDNRLTEKA  180
SENGCLSANF DSIQKGTMSN NPGSLLTLAN DWKLQQSMTI NHDTLESSRL MGHLASTSSV  240
HRPALSTRPM ANSFMAQFRH PPRSYHLCPS SGQEKILPAG HSTFDEEVQS TLRSSAMGYT  300
NARSSNDQGL ETMFSAVSYE DRSNPSYGGP AVTEHSVYPA IPTPPSMDFN FSYAGDFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	9	124	64	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	9	124	64	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	9	124	64	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	9	124	64	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	9	124	67	174	NAC domain-containing protein 19
3swm_B	1e-50	9	124	67	174	NAC domain-containing protein 19
3swm_C	1e-50	9	124	67	174	NAC domain-containing protein 19
3swm_D	1e-50	9	124	67	174	NAC domain-containing protein 19
3swp_A	1e-50	9	124	67	174	NAC domain-containing protein 19
3swp_B	1e-50	9	124	67	174	NAC domain-containing protein 19
3swp_C	1e-50	9	124	67	174	NAC domain-containing protein 19
3swp_D	1e-50	9	124	67	174	NAC domain-containing protein 19
4dul_A	1e-50	9	124	64	171	NAC domain-containing protein 19
4dul_B	1e-50	9	124	64	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.2655	0.0	protonema

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269\|PubMed:15319476, ECO:0000269\|PubMed:16581911}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024367539.1	0.0	NAC domain-containing protein 72-like isoform X2
Swissprot	Q93VY3	3e-56	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	A0A2K1IB16	0.0	A0A2K1IB16_PHYPA; Uncharacterized protein
STRING	PP1S164_25V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-58	NAC family protein

Link Out ? help Back to Top
Phytozome	Pp3c27_7430V3.5.p

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]