PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c27_7430V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 39811.3 Da PI: 8.3174 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.9 | 4.3e-32 | 14 | 89 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl Pp3c27_7430V3.5.p 14 GEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIHMSkGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 89 689************************************98757778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.166 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-38 | 9 | 118 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-15 | 17 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MLNCATSTDK ALFGEREWYF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIHMSKGHSK 60 VGVKKALVFY RGKAPKGEKT NWIMHEYRLA EGVSTSTHHP RRNSSRLDDW VLCRIYEKTS 120 HAQRASKEYE NSSVEEVLAS LPDSVDDLRF VLPRLNSLNG NLELAVQQEA LGDNRLTEKA 180 SENGCLSANF DSIQKGTMSN NPGSLLTLAN DWKLQQSMTI NHDTLESSRL MGHLASTSSV 240 HRPALSTRPM ANSFMAQFRH PPRSYHLCPS SGQEKILPAG HSTFDEEVQS TLRSSAMGYT 300 NARSSNDQGL ETMFSAVSYE DRSNPSYGGP AVTEHSVYPA IPTPPSMDFN FSYAGDFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-50 | 9 | 124 | 64 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-50 | 9 | 124 | 64 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2655 | 0.0 | protonema |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367539.1 | 0.0 | NAC domain-containing protein 72-like isoform X2 | ||||
Swissprot | Q93VY3 | 3e-56 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A2K1IB16 | 0.0 | A0A2K1IB16_PHYPA; Uncharacterized protein | ||||
STRING | PP1S164_25V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-58 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c27_7430V3.5.p |
Publications ? help Back to Top | |||
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