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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pp3c27_7430V3.5.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
| Family |
NAC |
| Protein Properties |
Length: 359aa MW: 39811.3 Da PI: 8.3174 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pp3c27_7430V3.5.p | genome | COSMOSS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 102.9 | 4.3e-32 | 14 | 89 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
+e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ + ++++vg+kk Lvfy+g+apkgekt+W+mheyrl
Pp3c27_7430V3.5.p 14 GEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIHMSkGHSKVGVKKALVFYRGKAPKGEKTNWIMHEYRL 89
689************************************98757778***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 359 aa
Download sequence Send
to blast |
MLNCATSTDK ALFGEREWYF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIHMSKGHSK 60
VGVKKALVFY RGKAPKGEKT NWIMHEYRLA EGVSTSTHHP RRNSSRLDDW VLCRIYEKTS 120
HAQRASKEYE NSSVEEVLAS LPDSVDDLRF VLPRLNSLNG NLELAVQQEA LGDNRLTEKA 180
SENGCLSANF DSIQKGTMSN NPGSLLTLAN DWKLQQSMTI NHDTLESSRL MGHLASTSSV 240
HRPALSTRPM ANSFMAQFRH PPRSYHLCPS SGQEKILPAG HSTFDEEVQS TLRSSAMGYT 300
NARSSNDQGL ETMFSAVSYE DRSNPSYGGP AVTEHSVYPA IPTPPSMDFN FSYAGDFN*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-50 | 9 | 124 | 64 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-50 | 9 | 124 | 67 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-50 | 9 | 124 | 64 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-50 | 9 | 124 | 64 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves and in root pericycle and epidermis. {ECO:0000269|PubMed:15319476, ECO:0000269|PubMed:16581911}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
