PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c27_5490V3.4.p | ||||||||
Common Name | PHYPADRAFT_196844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 36771.5 Da PI: 6.2477 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.1e-17 | 64 | 114 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr ++ +g Wv eIr p++ + r++lg+f tae+Aa+a++ a+++l+g+ Pp3c27_5490V3.4.p 64 IYRGVRKRP-WGIWVTEIRRPKN---KSRIWLGSFATAEMAARAYDCAALALRGN 114 69*******.**********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-12 | 63 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.65E-29 | 63 | 121 | No hit | No description |
SMART | SM00380 | 9.4E-32 | 64 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.853 | 64 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 64 | 122 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-19 | 64 | 121 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-9 | 65 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MSDAGGNPHG VGKERSPDGN AGVDSGADEQ DDSNERVESP TLSKREEREV RKKAKLEGDT 60 RHPIYRGVRK RPWGIWVTEI RRPKNKSRIW LGSFATAEMA ARAYDCAALA LRGNGALLNF 120 PKMAASLPRP ADLTDKSIQA AATIAANNFA QLPSEMDVYG AMPSQSALSS SPKGDEDHQQ 180 HGSQQKLRQT SKSTTFTLGR VGGSSSQRLI SNSDGSKSYQ PSSSTKQGEE ANLHKIIVST 240 SNPQSRSSEI AGTQSRYSSM CTSDTESMEN LKHHATGGEN NPPSSSGVQQ LLFVDSEDMF 300 TIGFTNLCDA MCIPPPAPEH ATETDGEEGS TIWEPHLWSY * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-17 | 65 | 121 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-17 | 62 | 121 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024367399.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X2 | ||||
Refseq | XP_024367400.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X2 | ||||
Refseq | XP_024367401.1 | 0.0 | ethylene-responsive transcription factor ERF034-like isoform X2 | ||||
TrEMBL | A9TNY0 | 0.0 | A9TNY0_PHYPA; Predicted protein | ||||
STRING | PP1S276_50V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-19 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c27_5490V3.4.p |
Entrez Gene | 5943534 |
Publications ? help Back to Top | |||
---|---|---|---|
|