PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c26_4660V3.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 43597.9 Da PI: 6.3238 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.9 | 1.3e-55 | 20 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++k+++ ++++ ++i evd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWkatgkdk+v Pp3c26_4660V3.7.p 20 LPPGFRFHPTDEELVSYYLTRKIRNPDFSV-RAIGEVDLNKCEPWDLPVKATFGEKEWYFFSLRDRKYPTGLRTNRATEKGYWKATGKDKDV 110 79****************************.89***************888889************************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ +++lvg+kktLvfy+grapkgekt+W+mheyr+ Pp3c26_4660V3.7.p 111 LRSgDHSLVGMKKTLVFYRGRAPKGEKTSWIMHEYRV 147 *9967778***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-64 | 15 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.503 | 20 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-29 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MATMCVGKNS LEMQGSNMEL PPGFRFHPTD EELVSYYLTR KIRNPDFSVR AIGEVDLNKC 60 EPWDLPVKAT FGEKEWYFFS LRDRKYPTGL RTNRATEKGY WKATGKDKDV LRSGDHSLVG 120 MKKTLVFYRG RAPKGEKTSW IMHEYRVESD SSNQTNQELP RSKDEWVVCR VFYKNGGGRH 180 KYVLHSGLDS LPNNSDSAIP GHLESSPNPS VNEDGDCDTR VKGAEREVTW MGGPKLGVSI 240 TPTRLKSIAA SSPDTNISLY NQNPNFLDFG ISPHGAMSNM TSLKSFNRNG NRMRLKDEPY 300 YACEGEDGAQ TNQGLGLDYS WCGGVIYQDM SLEGPIAPFL SLTAEIDCIT ESFSEEQQAR 360 PPSRIRSLSG VPEIHGPMDT LQEIMWAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-56 | 16 | 179 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-56 | 16 | 179 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-56 | 16 | 179 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-56 | 16 | 179 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-56 | 16 | 179 | 16 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-56 | 16 | 179 | 13 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-56 | 16 | 179 | 13 | 170 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024366244.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024366245.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024366246.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024366247.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024366249.1 | 0.0 | NAC domain-containing protein 92-like | ||||
Refseq | XP_024366250.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A2K1IBV9 | 0.0 | A0A2K1IBV9_PHYPA; Uncharacterized protein | ||||
STRING | PP1S159_57V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 5e-79 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c26_4660V3.7.p |